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Comparative DNA methylation analysis to decipher common and cell type-specific patterns among multiple cell types 期刊论文
BRIEFINGS IN FUNCTIONAL GENOMICS, 2016, 卷号: 15, 期号: 6, 页码: 399-407
作者:  Yang, Xiaofei;  Shao, Xiaojian;  Gao, Lin;  Zhang, Shihua
收藏  |  浏览/下载：158/0  |  提交时间：2018/07/30
DNA methylation patterns  differentially methylation regions  comparative studies  tissue-specific methylation  cancer epigenomics  
Quantitative function and algorithm for community detection in bipartite networks 期刊论文
INFORMATION SCIENCES, 2016, 卷号: 367, 页码: 874-889
作者:  Li, Zhenping;  Wang, Rui-Sheng;  Zhang, Shihua;  Zhang, Xiang-Sun
收藏  |  浏览/下载：160/0  |  提交时间：2018/07/30
Bipartite network  Community  Quantitative function  Integer programming  Label propagation algorithm  
An integrative and comparative study of pan-cancer transcriptomes reveals distinct cancer common and specific signatures 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 13
作者:  Cao, Zhen;  Zhang, Shihua
收藏  |  浏览/下载：130/0  |  提交时间：2018/07/30
An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data 期刊论文
Algorithms for Molecular Biology, 2016, 卷号: 11, 期号: 1
作者:  Lu,Jianbo;  Xu,Guoliang;  Zhang,Shihua;  Lu,Benzhuo
收藏  |  浏览/下载：131/0  |  提交时间：2018/07/30
Superposition  Protein structure alignment  Iterative closest point  
DrugE-Rank: improving drug-target interaction prediction of new candidate drugs or targets by ensemble learning to rank 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 12, 页码: 18-27
作者:  Yuan, Qingjun;  Gao, Junning;  Wu, Dongliang;  Zhang, Shihua;  Mamitsuka, Hiroshi;  Zhu, Shanfeng
收藏  |  浏览/下载：128/0  |  提交时间：2018/07/30
Local community extraction in directed networks 期刊论文
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2016, 卷号: 452, 页码: 258-265
作者:  Ning, Xuemei;  Liu, Zhaoqi;  Zhang, Shihua
收藏  |  浏览/下载：132/0  |  提交时间：2018/07/30
Complex network  Community structure  Clustering  Optimization  
Integrative analysis for identifying joint modular patterns of gene-expression and drug-response data 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 11, 页码: 1724-1732
作者:  Chen, Jinyu;  Zhang, Shihua
收藏  |  浏览/下载：138/0  |  提交时间：2018/07/30
A Two-Stage Method to Identify Joint Modules From Matched MicroRNA and mRNA Expression Data 期刊论文
IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2016, 卷号: 15, 期号: 4, 页码: 362-370
作者:  Min, Wenwen;  Liu, Juan;  Luo, Fei;  Zhang, Shihua
收藏  |  浏览/下载：166/0  |  提交时间：2018/07/30
L-0-penalized singular value decomposition (L-0-SVD)  miRNA cluster  miRNA-gene joint module  multiple-output sparse group lasso  
High-dimensional genomic data bias correction and data integration using MANCIE 期刊论文
NATURE COMMUNICATIONS, 2016, 卷号: 7, 页码: 8
作者:  Zang, Chongzhi;  Wang, Tao;  Deng, Ke;  Li, Bo;  Hu, Sheng'en;  Qin, Qian;  Xiao, Tengfei;  Zhang, Shihua;  Meyer, Clifford A.;  He, Housheng Hansen;  Brown, Myles;  Liu, Jun S.;  Xie, Yang;  Liu, X. Shirley
收藏  |  浏览/下载：158/0  |  提交时间：2018/07/30
A Probabilistic Method for Estimating the Sharing of Identity by Descent for Populations with Migration 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2016, 卷号: 13, 期号: 2, 页码: 281-290
作者:  Ni, Xumin;  Guo, Wei;  Yuan, Kai;  Yang, Xiong;  Ma, Zhiming;  Xu, Shuhua;  Zhang, Shihua
收藏  |  浏览/下载：173/0  |  提交时间：2018/07/30
Population genetics  identity by descent  probabilistic method  Markov process