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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 期号: D1, 页码: D27-D38
作者:  Xue, Yongbiao;  Bao, Yiming;  Zhang Zhang;  Zhao, Wenming;  Xiao, Jingfa;  He, Shun-min;  Zhang, Guoqing;  Li, Yixue;  Guoping, Zhao;  Chen, Runsheng;  Zeng, Jingyao;  Zhang, Yadong;  Shang, Yun-fei;  Mai, Jialin;  Shi, Shuo;  Lu, Mingming;  Bu, Congfan;  Zhang, Zhewen;  Du, Zhenglin;  Wang, Yinying;  Kang, Hongen;  Xu, Tianyi;  Hao, Lili;  Jia, Peilin;  Jiang, Shuai;  Qian, Qiheng;  Zhu, Tong-tong;  Shang, Yunfei;  Zong, Wenting;  Jin, Tong;  Zhang, Yuansheng;  Zou, Dong;  Zhang, Zhang;  Du, Qiang;  Feng, Changrui;  Ma, Lina;  Zhang, Sisi;  Wang, Anke;  Dong, Lili;  Wang, Yan-qing;  Liu, Wan;  Yan, Xing;  Ling, Yunchao;  Zhao, Guoping;  Zhou, Zhihua;  Kang, Wang;  Zhang, Tao;  Ma, Shuai;  Yan, Haoteng;  Liu, Zunpeng;  Ji, Zejun;  Cai, Yusheng;  Wang, Si;  Song, Moshi;  Ren, Jie;  Zhou, Qi;  Qu, Jing;  Zhang, Weiqi;  Liu, Guanghui;  Chen, Xu;  Chen, Tingting;  Sisi, Zhang;  Sun, Yanling;  Yu, Caixia;  Tang, Bixia;  Zhu, Junwei;  Zhai, Shuang;  Sun, Yubin;  Chen, Qiancheng;  Yang, Xiaoyu;  Zhang, Xin;  Sang, Zhengqi;  Wang, Yonggang;  Zhao, Yilin;  Chen, Huanxin;  Lan, Li;  Wang, Yanqing;  Ma, Yingke;  Jia, Yaokai;  Zheng, Xin-chang;  Chen, Meili;  Dong, Zou;  Zhu, Tongtong;  Ming, Chen;  Niu, Guangyi;  Pan, Rong;  Jing, Wei;  Sang, Jian;  Liu, Chang;  Xiong, Yujia;  Lili, Hao;  Zhang, Mochen;  Wang, Guoliang;  Yi, Lizhi;  Wei, Zhao;  Zong, Wenting;  Wu, Song;  Xiong, Zhuang;  Rujiao, Li;  Zheng, Gong;  Li, Rujiao;  Liu, Lin;  Li, Zhao;  Li, Qianpeng;  Wei, Jing;  Luo, Sicheng;  Wang, Jiajia;  Shi, Yirong;  Zhou, Honghong;  Zhang, Peng;  Song, Tingrui;  Li, Yanyan;  Yang, Fei;  Li, Mengwei;  Li, Zhao-hua;  Kang, Hongen;  Zheng, Xinchang;  Li, Ru-jiao;  Tian, Dongmei;  Liu, Xiaonan;  Li, Cuiping;  Teng, Xufei;  Song, Shuhui;  Zhang, Yang;  Niu, Guangyi;  Zhu, Tongtong;  Zhang, Yuansheng;  Chen, Ruru;  Zhang, Rongqin;  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  He, Yungang;  Zhen, Yang;  Li, Cuiping;  Zhu, Junwei;  Li, Lun;  Li, Na;  Gong, Zheng;  Chen, Meili;  Ying Cui;  Duan, Guangya;  Tong, Jin;  Wu, Gangao;  Huang, Tianhao;  Jin, Enhui;  Zhao, Wei;  Kang, Hailong;  Wang, Zhonghuang;  Zeng, Jingyao;  Chen, Hua;  Li, Mingkun;  Zhao, Wenming;  Ning, Wanshan;  Xue, Yu;  Liu, Yanhu;  Cui, Ying;  Zhou, Qijun;  Liu, Xingyan;  Zhang, Longlong;  Mao, Bingyu;  Zhang, Shihua;  Zhang, Yaping;  Wang, Guodong;  Zhu, Qianghui;  Li, Xin;  Li, Menghua;  Liu, Yuanming;  Luo, Hong;  Wu, Xiaoyuan;  Jing, Haichun;  Pan, Yitong;  Chen, Ming;  Ma, Lina;  Shi, Leisheng;  Li, Mingkun;  Lan, Li;  Bao, Yiming;  Zhao, Wen-ming;  Zuo, Zhixiang;  Ren, Jian;  Zhang, Xinxin;  Xiao, Yun;  Li, Xia;  Liu, Dan;  Zhang, Chi;  Xue, Yu;  Zhao, Zheng;  Jiang, Tao;  Wu, Wanying;  Zhao, Fangqing;  Meng, Xianwen;  Peng, Di;  Luo, Hao;  Gao, Feng;  Lin, Shaofeng;  Liu, Chuijie;  Guo, Anyuan;  Yuan, Hao;  Su, Tianhan;  Zhang, Yong E.;  Zhou, Yincong;  Zhang, Weizhi;  Fu, Shanshan;  Tan, Xiaodan;  Xie, Yubin;  Guo, Guoji;  Wang, Chenwei;  Liao, Xingyu;  Gao, Xin;  Wang, Jianxin;  Xie, Guiyan;  Yuan, Chunhui;  Tian, Feng;  Yang, Dechang;  Tang, Dachao;  Wu, Wenyi;  Gou, Yujie;  Han, Cheng;  Cui, Qinghua;  Li, Xiang Shang;  Li, Chuan-Yun;  Luo, XiaoTong;  Ren, Jia;  Li, Xia
收藏  |  浏览/下载：533/0  |  提交时间：2022/04/02
A Novel Sparse Graph-Regularized Singular Value Decomposition Model and Its Application to Genomic Data Analysis 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2021, 页码: 15
作者:  Min, Wenwen;  Wan, Xiang;  Chang, Tsung-Hui;  Zhang, Shihua
收藏  |  浏览/下载：136/0  |  提交时间：2022/04/02
Gene expression  Biology  Biological system modeling  Principal component analysis  Mathematical model  Data models  Big Data  Absolute-valued graph regularization  graph regularization  sparse learning  structured sparse singular value decomposition (SVD)  
Quantitative function and algorithm for community detection in bipartite networks 期刊论文
INFORMATION SCIENCES, 2016, 卷号: 367, 页码: 874-889
作者:  Li, Zhenping;  Wang, Rui-Sheng;  Zhang, Shihua;  Zhang, Xiang-Sun
收藏  |  浏览/下载：160/0  |  提交时间：2018/07/30
Bipartite network  Community  Quantitative function  Integer programming  Label propagation algorithm  
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data 期刊论文
BMC Systems Biology, 2013, 卷号: 7, 期号: Suppl 2
作者:  Zhang,Junhua;  Zhang,Shihua;  Wang,Yong;  Zhang,Xiang-Sun
收藏  |  浏览/下载：139/0  |  提交时间：2018/07/30
Detecting community structure: From parsimony to weighted parsimony 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2010, 卷号: 23, 期号: 5, 页码: 1024-1036
作者:  Zhang, Junhua;  Qiu, Yuqing;  Zhang, Xiang-Sun
收藏  |  浏览/下载：126/0  |  提交时间：2018/07/30
Cliques  community detection  complex networks  parsimony  
Determining modular organization of protein interaction networks by maximizing modularity density 期刊论文
BMC SYSTEMS BIOLOGY, 2010, 卷号: 4, 页码: 12
作者:  Zhang, Shihua;  Ning, Xue-Mei;  Ding, Chris;  Zhang, Xiang-Sun
收藏  |  浏览/下载：140/0  |  提交时间：2018/07/30
Detecting disease associated modules and prioritizing active genes based on high throughput data 期刊论文
BMC BIOINFORMATICS, 2010, 卷号: 11, 页码: 12
作者:  Qiu, Yu-Qing;  Zhang, Shihua;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：126/0  |  提交时间：2018/07/30
detectingcommunitystructurefromparsimonytoweightedparsimony 期刊论文
journalofsystemsscienceandcomplexity, 2010, 卷号: 000, 期号: 005, 页码: 1024
作者:  Zhang Xiangsun;  Zhang Junhua;  Qiu Yuqing
收藏  |  浏览/下载：133/0  |  提交时间：2020/01/10
Exploring the constrained maximum edge-weight connected graph problem 期刊论文
ACTA MATHEMATICAE APPLICATAE SINICA-ENGLISH SERIES, 2009, 卷号: 25, 期号: 4, 页码: 697-708
作者:  Li, Zhen-ping;  Zhang, Shi-hua;  Zhang, Xiang-Sun;  Chen, Luo-nan
收藏  |  浏览/下载：122/0  |  提交时间：2018/07/30
connected subgraph  integer linear programming model  network flow  constraint Steiner network  maximum edge weight, heuristic algorithm  
Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2009, 卷号: 5, 期号: 9, 页码: 12
作者:  Wang, Jiguang;  Zhang, Shihua;  Wang, Yong;  Chen, Luonan;  Zhang, Xiang-Sun
收藏  |  浏览/下载：136/0  |  提交时间：2018/07/30