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hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 16
作者:  Lu, Yong;  Xue, Gang;  Zheng, Ningbo;  Han, Kun;  Yang, Wenzhong;  Wang, Rui-Sheng;  Wu, Lingyun;  Miller, Lance D.;  Pardee, Timothy;  Triozzi, Pierre L.;  Lo, Hui-Wen;  Watabe, Kounosuke;  Wong, Stephen T. C.;  Pasche, Boris C.;  Zhang, Wei;  Jin, Guangxu
收藏  |  浏览/下载：118/0  |  提交时间：2023/02/07
single-cell RNA sequencing (scRNA-seq)  single-cell mass cytometry (CyTOF)  Pareto optimization  projection-free single-cell modeling  response to immune checkpoint blockade  
Information spreading with relative attributes on signed networks 期刊论文
INFORMATION SCIENCES, 2021, 卷号: 551, 页码: 54-66
作者:  Niu, Ya-Wei;  Qu, Cun-Quan;  Wang, Guang-Hui;  Wu, Jian-Liang;  Yan, Gui-Ying
收藏  |  浏览/下载：149/0  |  提交时间：2021/04/26
Information spreading  Relative attributes  Signed networks  Structural balance  Positive edges  Negative edges  
Modes of genetic adaptations underlying functional innovations in the rumen 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2020, 页码: 21
作者:  Pan, Xiangyu;  Cai, Yudong;  Li, Zongjun;  Chen, Xianqing;  Heller, Rasmus;  Wang, Nini;  Wang, Yu;  Zhao, Chen;  Wang, Yong;  Xu, Han;  Li, Songhai;  Li, Ming;  Li, Cunyuan;  Hu, Shengwei;  Li, Hui;  Wang, Kun;  Chen, Lei;  Wei, Bin;  Zheng, Zhuqing;  Fu, Weiwei;  Yang, Yue;  Zhang, Tingting;  Hou, Zhuoting;  Yan, Yueyang;  Lv, Xiaoyang;  Sun, Wei;  Li, Xinyu;  Huang, Shisheng;  Liu, Lixiang;  Mao, Shengyong;  Liu, Wenqing;  Hua, Jinlian;  Li, Zhipeng;  Zhang, Guojie;  Chen, Yulin;  Wang, Xihong;  Qiu, Qiang;  Dalrymple, Brian P.;  Wang, Wen;  Jiang, Yu
收藏  |  浏览/下载：196/0  |  提交时间：2021/01/14
rumen innovations  comparative transcriptomics  comparative genomics  evo-devo  evolution of organs  
Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation 期刊论文
NATURE COMMUNICATIONS, 2020, 卷号: 11, 期号: 1, 页码: 20
作者:  Xin, Jingxue;  Zhang, Hui;  He, Yaoxi;  Duren, Zhana;  Bai, Caijuan;  Chen, Lang;  Luo, Xin;  Yan, Dong-Sheng;  Zhang, Chaoyu;  Zhu, Xiang;  Yuan, Qiuyue;  Feng, Zhanying;  Cui, Chaoying;  Qi, Xuebin;  Ouzhuluobu;  Wong, Wing Hung;  Wang, Yong;  Su, Bing
收藏  |  浏览/下载：172/0  |  提交时间：2021/01/14
RWHMDA: Random Walk on Hypergraph for Microbe-Disease Association Prediction 期刊论文
FRONTIERS IN MICROBIOLOGY, 2019, 卷号: 10, 页码: 10
作者:  Niu, Ya-Wei;  Qu, Cun-Quan;  Wang, Guang-Hui;  Yan, Gui-Ying
收藏  |  浏览/下载：263/0  |  提交时间：2020/01/10
hypergraph  random walk  microbe  human diseases  association prediction  
Integrating random walk and binary regression to identify novel miRNA-disease association 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 13
作者:  Niu, Ya-Wei;  Wang, Guang-Hui;  Yan, Gui-Ying;  Chen, Xing
收藏  |  浏览/下载：187/0  |  提交时间：2019/03/05
microRNA  Disease  miRNA-disease association  Random walk  Binary regression  
Maximal entropy random walk on heterogenous network for MIRNA-disease Association prediction 期刊论文
MATHEMATICAL BIOSCIENCES, 2018, 卷号: 306, 页码: 1-9
作者:  Ya-Wei, Niu;  Hua, Liu;  Guang-Hui, Wang;  Gui-Ying, Yan
收藏  |  浏览/下载：172/0  |  提交时间：2019/03/05
Maximal entropy random walk  Heterogenous network  microRNA  Disease  miRNA-disease association  
MKRMDA: multiple kernel learning-based Kronecker regularized least squares for MiRNA-disease association prediction 期刊论文
JOURNAL OF TRANSLATIONAL MEDICINE, 2017, 卷号: 15, 页码: 14
作者:  Chen, Xing;  Niu, Ya-Wei;  Wang, Guang-Hui;  Yan, Gui-Ying
收藏  |  浏览/下载：166/0  |  提交时间：2018/07/30
miRNA  Disease  miRNA-disease association  Multiple kernel learning  Kronecker regularized least squares  
MKRMDA: multiple kernel learning-based Kronecker regularized least squares for MiRNA–disease association prediction 期刊论文
Journal of Translational Medicine, 2017, 卷号: 15, 期号: 1
作者:  Chen,Xing;  Niu,Ya-Wei;  Wang,Guang-Hui;  Yan,Gui-Ying
收藏  |  浏览/下载：163/0  |  提交时间：2018/07/30
miRNA  Disease  miRNA–disease association  Multiple kernel learning  Kronecker regularized least squares  
HAMDA: Hybrid Approach for MiRNA-Disease Association prediction 期刊论文
JOURNAL OF BIOMEDICAL INFORMATICS, 2017, 卷号: 76, 页码: 50-58
作者:  Chen, Xing;  Niu, Ya-Wei;  Wang, Guang-Hui;  Yan, Gui-Ying
收藏  |  浏览/下载：171/0  |  提交时间：2018/07/30
miRNA  Disease  miRNA-disease association  Hybrid prediction approach  Recommendation systems