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hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 16
作者:  Lu, Yong;  Xue, Gang;  Zheng, Ningbo;  Han, Kun;  Yang, Wenzhong;  Wang, Rui-Sheng;  Wu, Lingyun;  Miller, Lance D.;  Pardee, Timothy;  Triozzi, Pierre L.;  Lo, Hui-Wen;  Watabe, Kounosuke;  Wong, Stephen T. C.;  Pasche, Boris C.;  Zhang, Wei;  Jin, Guangxu
收藏  |  浏览/下载：118/0  |  提交时间：2023/02/07
single-cell RNA sequencing (scRNA-seq)  single-cell mass cytometry (CyTOF)  Pareto optimization  projection-free single-cell modeling  response to immune checkpoint blockade  
Quantitative function and algorithm for community detection in bipartite networks 期刊论文
INFORMATION SCIENCES, 2016, 卷号: 367, 页码: 874-889
作者:  Li, Zhenping;  Wang, Rui-Sheng;  Zhang, Shihua;  Zhang, Xiang-Sun
收藏  |  浏览/下载：160/0  |  提交时间：2018/07/30
Bipartite network  Community  Quantitative function  Integer programming  Label propagation algorithm  
Inferring domain-domain interactions from protein-protein interactions in the complex network conformation 期刊论文
BMC Systems Biology, 2012, 卷号: 6, 期号: Suppl 1
作者:  Chen,Chen;  Zhao,Jun-Fei;  Huang,Qiang;  Wang,Rui-Sheng;  Zhang,Xiang-Sun
收藏  |  浏览/下载：106/0  |  提交时间：2018/07/30
Two-stage flux balance analysis of metabolic networks for drug target identification 期刊论文
BMC SYSTEMS BIOLOGY, 2011, 卷号: 5, 页码: 11
作者:  Li, Zhenping;  Wang, Rui-Sheng;  Zhang, Xiang-Sun
收藏  |  浏览/下载：121/0  |  提交时间：2018/07/30
Self-organizing map approaches for the haplotype assembly problem 期刊论文
MATHEMATICS AND COMPUTERS IN SIMULATION, 2009, 卷号: 79, 期号: 10, 页码: 3026-3037
作者:  Wu, Ling-Yun;  Li, Zhenping;  Wang, Rui-Sheng;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：138/0  |  提交时间：2018/07/30
SNP  Haplotype assembly  Minimum error correction  Self-organizing maps  Neural network  
Modeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli 期刊论文
BMC Bioinformatics, 2009, 卷号: 10, 期号: Suppl 4
作者:  Wang,Rui-Sheng;  Jin,Guangxu;  Zhang,Xiang-Sun;  Chen,Luonan
收藏  |  浏览/下载：107/0  |  提交时间：2018/07/30
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures 期刊论文
NEUROCOMPUTING, 2008, 卷号: 72, 期号: 1-3, 页码: 134-141
作者:  Wang, Rui-Sheng;  Zhang, Shihua;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：131/0  |  提交时间：2018/07/30
Complex networks  Biological networks  Community structure  Nonnegative matrix factorization  Similarity measure  
Quantitative function for community detection 期刊论文
PHYSICAL REVIEW E, 2008, 卷号: 77, 期号: 3, 页码: 9
作者:  Li, Zhenping;  Zhang, Shihua;  Wang, Rui-Sheng;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：114/0  |  提交时间：2018/07/30
Inferring transcriptional interactions and regulator activities from experimental data 期刊论文
MOLECULES AND CELLS, 2007, 卷号: 24, 期号: 3, 页码: 307-315
作者:  Wang, Rui-Sheng;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：132/0  |  提交时间：2018/07/30
combinatorial regulation  regulator activity  transcription factor  transcriptional interactions  
Inferring transcriptional regulatory networks from high-throughput data 期刊论文
BIOINFORMATICS, 2007, 卷号: 23, 期号: 22, 页码: 3056-3064
作者:  Wang, Rui-Sheng;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：123/0  |  提交时间：2018/07/30