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BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载：159/0  |  提交时间：2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
Compressed Coding, AMP-Based Decoding, and Analog Spatial Coupling 期刊论文
IEEE TRANSACTIONS ON COMMUNICATIONS, 2020, 卷号: 68, 期号: 12, 页码: 7362-7375
作者:  Liang, Shansuo;  Liang, Chulong;  Ma, Junjie;  Ping, Li
收藏  |  浏览/下载：214/0  |  提交时间：2021/04/26
Decoding  Error correction  Encoding  Error correction codes  Signal to noise ratio  Modulation  Compressed sensing  Compressed sensing  forward error control coding  approximate message passing  state evolution  area theorem and analog spatial-coupling  
A Self-test Prediction Model to Determine the Probability Risk of Non-alcoholic Fatty Liver Disease 期刊论文
BIOMEDICAL AND ENVIRONMENTAL SCIENCES, 2020, 卷号: 33, 期号: 11, 页码: 857-861
作者:  Li Qiang;  Shen Qun Lun;  Xu Chao Nan;  Li Ming Liang;  Ma Zhi Min;  Zhang Shan;  Chen Shuo;  Zhang Min Ying;  Zhang Jing Bo;  Liu Feng;  Yang Xing Hua
收藏  |  浏览/下载：146/0  |  提交时间：2021/04/26
NeuralEE: A GPU-Accelerated Elastic Embedding Dimensionality Reduction Method for Visualizing Large-Scale scRNA-Seq Data 期刊论文
FRONTIERS IN GENETICS, 2020, 卷号: 11, 页码: 8
作者:  Xiong, Jiankang;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载：165/0  |  提交时间：2021/01/14
single-cell RNA sequencing  elastic embedding  neural networks  large-scale  stochastic optimization  parametric models  generalizable models  
Epidemiology characteristics of the clonal complexes of Mycobacterium tuberculosis Lineage 4 in China 期刊论文
INFECTION GENETICS AND EVOLUTION, 2020, 卷号: 84, 页码: 7
作者:  Ni, Xumin;  Zhu, Chendi;  Li, Qing;  Jiang, Hui;  Liu, Jingyi;  Chen, Zhi;  He, Li;  Jia, Junnan;  Zhang, Zongde;  Ma, Liang;  Li, Weimin
收藏  |  浏览/下载：136/0  |  提交时间：2021/01/14
Mycobacterium tuberculosis  Lineage 4  Clonal complexes  Geographical distribution  Epidemiology characteristics  
RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data 期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 期号: 11, 页码: 3299-3306
作者:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载：169/0  |  提交时间：2020/09/23
A Branch Point on Differentiation Trajectory is the Bifurcating Event Revealed by Dynamical Network Biomarker Analysis of Single-Cell Data 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 366-375
作者:  Chen, Ziwei;  Bai, Xiangqi;  Ma, Liang;  Wang, Xiawei;  Liu, Xiuqin;  Liu, Yuting;  Chen, Luonan;  Wan, Lin
收藏  |  浏览/下载：172/0  |  提交时间：2020/05/24
Trajectory  Heuristic algorithms  Mice  Correlation  Reactive power  Pseudo temporal trajectory  branch point  DNB theory  reconstruction  single-cell data  bifurcation  dynamical system  
Statistical test of structured continuous trees based on discordance matrix 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 23, 页码: 4962-4970
作者:  Bai, Xiangqi;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：130/0  |  提交时间：2020/05/24
Multi-scale analysis of schizophrenia risk genes, brain structure, and clinical symptoms reveals integrative clues for subtyping schizophrenia patients 期刊论文
JOURNAL OF MOLECULAR CELL BIOLOGY, 2019, 卷号: 11, 期号: 8, 页码: 678-687
作者:  Ma, Liang;  Rolls, Edmund T.;  Liu, Xiuqin;  Liu, Yuting;  Jiao, Zeyu;  Wang, Yue;  Gong, Weikang;  Ma, Zhiming;  Gong, Fuzhou;  Wan, Lin
收藏  |  浏览/下载：209/0  |  提交时间：2020/05/24
Schizophrenia  PANSS  multi-scale analysis  hot cluster  grey matter volume  pathway  
DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 15, 页码: 2593-2601
作者:  Chen, Ziwei;  An, Shaokun;  Bai, Xiangqi;  Gong, Fuzhou;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：190/0  |  提交时间：2020/01/10