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BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载：170/0  |  提交时间：2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 15, 页码: 2593-2601
作者:  Chen, Ziwei;  An, Shaokun;  Bai, Xiangqi;  Gong, Fuzhou;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：193/0  |  提交时间：2020/01/10
The cis-trans binding strength defined by motif frequencies facilitates statistical inference of transcriptional regulation 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 11
作者:  Feng, Yance;  Zhang, Sheng;  Li, Liang;  Li, Lei M.
收藏  |  浏览/下载：154/0  |  提交时间：2019/10/28
BASE  Statistical inference  Transcriptional regulation  PUFA  DHA  EPA  Binding strength  
Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 3, 页码: 912-924
作者:  Wang, Pei;  Wang, Daojie;  Lu, Jinhu
收藏  |  浏览/下载：195/0  |  提交时间：2020/01/10
Structural controllability  Arabidopsis thaliana  gene network  functional gene  enrichment analysis  
BAUM: improving genome assembly by adaptive unique mapping and local overlap-layout-consensus approach 期刊论文
BIOINFORMATICS, 2018, 卷号: 34, 期号: 12, 页码: 2019-2028
作者:  Wang, Anqi;  Wang, Zhanyu;  Li, Zheng;  Li, Lei M.
收藏  |  浏览/下载：157/0  |  提交时间：2018/07/30
Estimating Phred scores of Illumina base calls by logistic regression and sparse modeling 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 14
作者:  Zhang, Sheng;  Wang, Bo;  Wan, Lin;  Li, Lei M.
收藏  |  浏览/下载：138/0  |  提交时间：2018/07/30
Base-calling  Logistic regression  Quality score  L-1 regularization  AIC  BIC  Empirical discrimination power  
Group-combined P-values with applications to genetic association studies 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 18, 页码: 2737-2743
作者:  Hu, Xiaonan;  Zhang, Wei;  Zhang, Sanguo;  Ma, Shuangge;  Li, Qizhai
收藏  |  浏览/下载：98/0  |  提交时间：2018/07/30
A two-phase procedure for non-normal quantitative trait genetic association study 期刊论文
BMC BIOINFORMATICS, 2016, 卷号: 17, 页码: 9
作者:  Zhang, Wei;  Li, Huiyun;  Li, Zhaohai;  Li, Qizhai
收藏  |  浏览/下载：107/0  |  提交时间：2018/07/30
Model selection  Quantitative trait genetic association studies  Robustness  Two-phase procedure  
Colored Noise Induced Bistable Switch in the Genetic Toggle Switch Systems 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2015, 卷号: 12, 期号: 3, 页码: 579-589
作者:  Wang, Pei;  Lu, Jinhu;  Yu, Xinghuo
收藏  |  浏览/下载：119/0  |  提交时间：2018/07/30
Colored noise  bistable switch  bifurcation  synchronization  quorum sensing  
Robust joint analysis allowing for model uncertainty in two-stage genetic association studies 期刊论文
BMC BIOINFORMATICS, 2011, 卷号: 12, 页码: 7
作者:  Pan, Dongdong;  Li, Qizhai;  Jiang, Ningning;  Liu, Aiyi;  Yu, Kai
收藏  |  浏览/下载：91/0  |  提交时间：2018/07/30