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Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Shan, Xu;  Chen, Jinyu;  Dong, Kangning;  Zhou, Wei;  Zhang, Shihua
收藏  |  浏览/下载：75/0  |  提交时间：2023/02/07
data integration  single-cell transcriptomics  spatial modular patterns  spatial transcriptomics  
Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 12
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：99/0  |  提交时间：2022/06/21
Simultaneous dose and dose rate optimization (SDDRO) of the FLASH effect for pencil-beam-scanning proton therapy 期刊论文
MEDICAL PHYSICS, 2021, 页码: 12
作者:  Gao, Hao;  Liu, Jiulong;  Lin, Yuting;  Gan, Gregory N.;  Pratx, Guillem;  Wang, Fen;  Langen, Katja;  Bradley, Jeffrey D.;  Rotondo, Ronny L.;  Li, Harold H.;  Chen, Ronald C.
收藏  |  浏览/下载：132/0  |  提交时间：2022/04/02
dose rate optimization  FLASH dose modifying factor  IMPT  proton therapy  
Article The cell-surface 5 '-nucleotidase CD73 defines a functional T memory cell subset that declines with age 期刊论文
CELL REPORTS, 2021, 卷号: 37, 期号: 6, 页码: 24
作者:  Fang, Fengqin;  Cao, Wenqiang;  Zhu, Weikang;  Lam, Nora;  Li, Lingjie;  Gaddam, Sadhana;  Wang, Yong;  Kim, Chulwoo;  Lambert, Simon;  Zhang, Huimin;  Hu, Bin;  Farber, Donna L.;  Weyand, Cornelia M.;  Goronzy, Jorg J.
收藏  |  浏览/下载：120/0  |  提交时间：2022/04/02
Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF 期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
作者:  Zhou, Guofeng;  Sun, Shaoyan;  Yuan, Qiuyue;  Zhang, Run;  Jiang, Ping;  Li, Guangyu;  Wang, Yong;  Li, Xiao
收藏  |  浏览/下载：126/0  |  提交时间：2021/10/26
heart failure with preserved ejection fraction  differentially expressed genes  differentially correlated gene pairs  differential network  molecular docking  
Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3, 页码: 15
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：111/0  |  提交时间：2022/04/02
cis-regulatory interaction networks  single-cell ATAC-seq  Gaussian graphical LASSO  
A novel model for the X-chromosome inactivation association on survival data 期刊论文
STATISTICAL METHODS IN MEDICAL RESEARCH, 2020, 卷号: 29, 期号: 5, 页码: 1305-1314
作者:  Han, Dongxiao;  Hao, Meiling;  Qu, Lianqiang;  Xu, Wei
收藏  |  浏览/下载：153/0  |  提交时间：2020/06/30
Cox model  genetic association test  frailty model  right-censored survival data  X-chromosome association  X-chromosome inactivation  
scTIM: seeking cell-type-indicative marker from single cell RNA-seq data by consensus optimization 期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 期号: 8, 页码: 2474-2485
作者:  Feng, Zhanying;  Ren, Xianwen;  Fang, Yuan;  Yin, Yining;  Huang, Chutian;  Zhao, Yimin;  Wang, Yong
收藏  |  浏览/下载：179/0  |  提交时间：2020/06/30
Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana 期刊论文
NPJ SYSTEMS BIOLOGY AND APPLICATIONS, 2019, 卷号: 5, 页码: 11
作者:  Duren, Zhana;  Wang, Yaling;  Wang, Jiguang;  Zhao, Xing-Ming;  Lv, Le;  Li, Xiaobo;  Liu, Jingdong;  Zhu, Xin-Guang;  Chen, Luonan;  Wang, Yong
收藏  |  浏览/下载：162/0  |  提交时间：2020/05/24