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Network-Regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 卷号: 15, 期号: 3, 页码: 944-953
Authors:  Min, Wenwen;  Liu, Juan;  Zhang, Shihua
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Sparse logistic regression  network-regularized penalty  survival risk prediction  feature selection  
Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2017, 卷号: 18, 期号: 5, 页码: 761-773
Authors:  Yang, Xiaofei;  Gao, Lin;  Zhang, Shihua
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cancer genomics  DNA-methylation  pan-cancer study  bioinformatics  
Comparative DNA methylation analysis to decipher common and cell type-specific patterns among multiple cell types 期刊论文
BRIEFINGS IN FUNCTIONAL GENOMICS, 2016, 卷号: 15, 期号: 6, 页码: 399-407
Authors:  Yang, Xiaofei;  Shao, Xiaojian;  Gao, Lin;  Zhang, Shihua
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DNA methylation patterns  differentially methylation regions  comparative studies  tissue-specific methylation  cancer epigenomics  
Over-expression of EPS15 is a favorable prognostic factor in breast cancer 期刊论文
MOLECULAR BIOSYSTEMS, 2015, 卷号: 11, 期号: 11, 页码: 2978-2985
Authors:  Dai, Xiaofeng;  Liu, Zhaoqi;  Zhang, Shihua
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Discovery of co-occurring driver pathways in cancer 期刊论文
BMC Bioinformatics, 2014, 卷号: 15, 期号: 1
Authors:  Zhang,Junhua;  Wu,Ling-Yun;  Zhang,Xiang-Sun;  Zhang,Shihua
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