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BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载：166/0  |  提交时间：2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 15, 页码: 2593-2601
作者:  Chen, Ziwei;  An, Shaokun;  Bai, Xiangqi;  Gong, Fuzhou;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：193/0  |  提交时间：2020/01/10
TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data 期刊论文
BMC GENOMICS, 2019, 卷号: 20, 页码: 16
作者:  An, Shaokun;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：193/0  |  提交时间：2019/10/28
Nonlinear dimensionality reduction  Elastic embedding  Visualization  Single-cell RNA sequencing  Time series  Cell fate decisions  Gene expression pattern  Oscillation  In-group proportion  
A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma 期刊论文
AMERICAN JOURNAL OF HUMAN GENETICS, 2009, 卷号: 85, 期号: 5, 页码: 679-691
作者:  Landi, Maria Teresa;  Chatterjee, Nilanjan;  Yu, Kai;  Goldin, Lynn R.;  Goldstein, Alisa M.;  Rotunno, Melissa;  Mirabello, Lisa;  Jacobs, Kevin;  Wheeler, William;  Yeager, Meredith;  Bergen, Andrew W.;  Li, Qizhai;  Consonni, Dario;  Pesatori, Angela C.;  Wacholder, Sholom;  Thun, Michael;  Diver, Ryan;  Oken, Martin;  Virtamo, Jarmo;  Albanes, Demetrius;  Wang, Zhaoming;  Burdette, Laurie;  Doheny, Kimberly F.;  Pugh, Elizabeth W.;  Laurie, Cathy;  Brennan, Paul;  Hung, Rayjean;  Gaborieau, Valerie;  McKay, James D.;  Lathrop, Mark;  McLaughlin, John;  Wang, Ying;  Tsao, Ming-Sound;  Spitz, Margaret R.;  Wang, Yufei;  Krokan, Hans;  Vatten, Lars;  Skorpen, Frank;  Arnesen, Egil;  Benhamou, Simone;  Bouchard, Christine;  Metsapalu, Andres;  Vooder, Tonu;  Nelis, Mari;  Vaelk, Kristian;  Field, John K.;  Chen, Chu;  Goodman, Gary;  Sulem, Patrick;  Thorleifsson, Gudmar;  Rafnar, Thorunn;  Eisen, Timothy;  Sauter, Wiebke;  Rosenberger, Albert;  Bickeboeller, Heike;  Risch, Angela;  Chang-Claude, Jenny;  Wichmann, H. Erich;  Stefansson, Kari;  Houlston, Richard;  Amos, Christopher I.;  Fraumeni, Joseph F., Jr.;  Savage, Sharon A.;  Bertazzi, Pier Alberto;  Tucker, Margaret A.;  Chanock, Stephen;  Caporaso, Neil E.
收藏  |  浏览/下载：136/0  |  提交时间：2018/07/30