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Statistical test of structured continuous trees based on discordance matrix 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 23, 页码: 4962-4970
作者:  Bai, Xiangqi;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：130/0  |  提交时间：2020/05/24
DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11
作者:  Zeng, Wanwen;  Chen, Xi;  Duren, Zhana;  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
收藏  |  浏览/下载：178/0  |  提交时间：2020/01/10
DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 15, 页码: 2593-2601
作者:  Chen, Ziwei;  An, Shaokun;  Bai, Xiangqi;  Gong, Fuzhou;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：189/0  |  提交时间：2020/01/10
Learning common and specific patterns from data of multiple interrelated biological scenarios with matrix factorization 期刊论文
NUCLEIC ACIDS RESEARCH, 2019, 卷号: 47, 期号: 13, 页码: 6606-6617
作者:  Zhang, Lihua;  Zhang, Shihua
收藏  |  浏览/下载：191/0  |  提交时间：2020/01/10
Model-based understanding of single-cell CRISPR screening 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11
作者:  Duan, Bin;  Zhou, Chi;  Zhu, Chengyu;  Yu, Yifei;  Li, Gaoyang;  Zhang, Shihua;  Zhang, Chao;  Ye, Xiangyun;  Ma, Hanhui;  Qu, Shen;  Zhang, Zhiyuan;  Wang, Ping;  Sun, Shuyang;  Liu, Qi
收藏  |  浏览/下载：185/0  |  提交时间：2020/01/10
Systems biology intertwines with single cell and AI 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 3
作者:  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：198/0  |  提交时间：2019/10/28
Systems biology  Network  Data integration  
TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data 期刊论文
BMC GENOMICS, 2019, 卷号: 20, 页码: 16
作者:  An, Shaokun;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：182/0  |  提交时间：2019/10/28
Nonlinear dimensionality reduction  Elastic embedding  Visualization  Single-cell RNA sequencing  Time series  Cell fate decisions  Gene expression pattern  Oscillation  In-group proportion  
Genetic Load and Potential Mutational Meltdown in Cancer Cell Populations 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 卷号: 36, 期号: 3, 页码: 541-552
作者:  Zhang, Yuezheng;  Li, Yawei;  Li, Tao;  Shen, Xu;  Zhu, Tianqi;  Tao, Yong;  Li, Xueying;  Wang, Di;  Ma, Qin;  Hu, Zheng;  Liu, Jialin;  Ruan, Jue;  Cai, Jun;  Wang, Hurng-Yi;  Lu, Xuemei
收藏  |  浏览/下载：240/0  |  提交时间：2020/01/10
genetic load  Muller's ratchet  HeLa cell line  copy number variation