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Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 12
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：99/0  |  提交时间：2022/06/21
Approximate distance correlation for selecting highly interrelated genes across datasets 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 11, 页码: 18
作者:  Shen, Qunlun;  Zhang, Shihua
收藏  |  浏览/下载：114/0  |  提交时间：2022/04/02
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：179/0  |  提交时间：2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
DrugE-Rank: improving drug-target interaction prediction of new candidate drugs or targets by ensemble learning to rank 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 12, 页码: 18-27
作者:  Yuan, Qingjun;  Gao, Junning;  Wu, Dongliang;  Zhang, Shihua;  Mamitsuka, Hiroshi;  Zhu, Shanfeng
收藏  |  浏览/下载：128/0  |  提交时间：2018/07/30
A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps 期刊论文
BIOINFORMATICS, 2010, 卷号: 26, 期号: 12, 页码: i261-i268
作者:  Zhang, Shihua;  Vasishtan, Daven;  Xu, Min;  Topf, Maya;  Alber, Frank
收藏  |  浏览/下载：117/0  |  提交时间：2018/07/30
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures 期刊论文
NEUROCOMPUTING, 2008, 卷号: 72, 期号: 1-3, 页码: 134-141
作者:  Wang, Rui-Sheng;  Zhang, Shihua;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：131/0  |  提交时间：2018/07/30
Complex networks  Biological networks  Community structure  Nonnegative matrix factorization  Similarity measure