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Variational deep embedding-based active learning for the diagnosis of pneumonia 期刊论文
FRONTIERS IN NEUROROBOTICS, 2022, 卷号: 16, 页码: 7
作者:  Huang, Jian;  Ding, Wen;  Zhang, Jiarun;  Li, Zhao;  Shu, Ting;  Kuosmanen, Pekka;  Zhou, Guanqun;  Zhou, Chuan;  Yu, Gang
收藏  |  浏览/下载：92/0  |  提交时间：2023/02/07
pneumonia diagnosis  active learning  variational autoencoders  brain-like computing  human-centric computing  
Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 12
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：99/0  |  提交时间：2022/06/21
Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF 期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
作者:  Zhou, Guofeng;  Sun, Shaoyan;  Yuan, Qiuyue;  Zhang, Run;  Jiang, Ping;  Li, Guangyu;  Wang, Yong;  Li, Xiao
收藏  |  浏览/下载：126/0  |  提交时间：2021/10/26
heart failure with preserved ejection fraction  differentially expressed genes  differentially correlated gene pairs  differential network  molecular docking  
Identification of Common Driver Gene Modules and Associations between Cancers through Integrated Network Analysis 期刊论文
GLOBAL CHALLENGES, 2021, 页码: 13
作者:  Gao, Bo;  Zhao, Yue;  Gao, Yonghang;  Li, Guojun;  Wu, Ling-Yun
收藏  |  浏览/下载：178/0  |  提交时间：2021/10/26
driver gene module  gene mutation  mutual exclusivity  network analysis  signaling pathway  
Anomaly Detection on Attributed Networks via Contrastive Self-Supervised Learning 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2021, 页码: 15
作者:  Liu, Yixin;  Li, Zhao;  Pan, Shirui;  Gong, Chen;  Zhou, Chuan;  Karypis, George
收藏  |  浏览/下载：120/0  |  提交时间：2022/04/02
Anomaly detection  Task analysis  Graph neural networks  Unsupervised learning  Predictive models  Pattern matching  Training  Anomaly detection  attributed networks  contrastive self-supervised learning  graph neural networks (GNNs)  unsupervised learning  
Multi-Level Comparative Framework Based on Gene Pair-Wise Expression Across Three Insulin Target Tissues for Type 2 Diabetes 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 页码: 16
作者:  Sun, Shaoyan;  Sung, Fengnan;  Wang, Yong
收藏  |  浏览/下载：195/0  |  提交时间：2020/01/10
type 2 diabetes  gene pairwise expression  dysfunctional interactions  multi-level analysis  random walk with restart  
Matrix Integrative Analysis (MIA) of Multiple Genomic Data for Modular Patterns 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 9, 页码: 12
作者:  Chen, Jinyu;  Zhang, Shihua
收藏  |  浏览/下载：175/0  |  提交时间：2018/07/30
bioinformatics  multi-dimensional genomics  matrix integrative analysis  data integration  module discovery  non-negative matrix factorization (NMF)  partial least squares (PLS)  
bmtkatoolkitfordeterminingmodulesinbiologicalbipartitenetworks 期刊论文
quantitativebiology, 2018, 卷号: 6, 期号: 2, 页码: 186
作者:  Wang Bei;  Chen Jinyu;  Zhang Shihua
收藏  |  浏览/下载：239/0  |  提交时间：2020/01/10
Integrative analysis for identifying joint modular patterns of gene-expression and drug-response data 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 11, 页码: 1724-1732
作者:  Chen, Jinyu;  Zhang, Shihua
收藏  |  浏览/下载：138/0  |  提交时间：2018/07/30
A Two-Stage Method to Identify Joint Modules From Matched MicroRNA and mRNA Expression Data 期刊论文
IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2016, 卷号: 15, 期号: 4, 页码: 362-370
作者:  Min, Wenwen;  Liu, Juan;  Luo, Fei;  Zhang, Shihua
收藏  |  浏览/下载：166/0  |  提交时间：2018/07/30
L-0-penalized singular value decomposition (L-0-SVD)  miRNA cluster  miRNA-gene joint module  multiple-output sparse group lasso