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Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 12
Authors:  Dong, Kangning;  Zhang, Shihua
Favorite  |  View/Download:25/0  |  Submit date:2022/06/21
Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF 期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
Authors:  Zhou, Guofeng;  Sun, Shaoyan;  Yuan, Qiuyue;  Zhang, Run;  Jiang, Ping;  Li, Guangyu;  Wang, Yong;  Li, Xiao
Favorite  |  View/Download:53/0  |  Submit date:2021/10/26
heart failure with preserved ejection fraction  differentially expressed genes  differentially correlated gene pairs  differential network  molecular docking  
Identification of Common Driver Gene Modules and Associations between Cancers through Integrated Network Analysis 期刊论文
GLOBAL CHALLENGES, 2021, 页码: 13
Authors:  Gao, Bo;  Zhao, Yue;  Gao, Yonghang;  Li, Guojun;  Wu, Ling-Yun
Favorite  |  View/Download:63/0  |  Submit date:2021/10/26
driver gene module  gene mutation  mutual exclusivity  network analysis  signaling pathway  
Anomaly Detection on Attributed Networks via Contrastive Self-Supervised Learning 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2021, 页码: 15
Authors:  Liu, Yixin;  Li, Zhao;  Pan, Shirui;  Gong, Chen;  Zhou, Chuan;  Karypis, George
Favorite  |  View/Download:47/0  |  Submit date:2022/04/02
Anomaly detection  Task analysis  Graph neural networks  Unsupervised learning  Predictive models  Pattern matching  Training  Anomaly detection  attributed networks  contrastive self-supervised learning  graph neural networks (GNNs)  unsupervised learning  
Multi-Level Comparative Framework Based on Gene Pair-Wise Expression Across Three Insulin Target Tissues for Type 2 Diabetes 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 页码: 16
Authors:  Sun, Shaoyan;  Sung, Fengnan;  Wang, Yong
Favorite  |  View/Download:113/0  |  Submit date:2020/01/10
type 2 diabetes  gene pairwise expression  dysfunctional interactions  multi-level analysis  random walk with restart  
Matrix Integrative Analysis (MIA) of Multiple Genomic Data for Modular Patterns 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 9, 页码: 12
Authors:  Chen, Jinyu;  Zhang, Shihua
Favorite  |  View/Download:105/0  |  Submit date:2018/07/30
bioinformatics  multi-dimensional genomics  matrix integrative analysis  data integration  module discovery  non-negative matrix factorization (NMF)  partial least squares (PLS)  
bmtkatoolkitfordeterminingmodulesinbiologicalbipartitenetworks 期刊论文
quantitativebiology, 2018, 卷号: 6, 期号: 2, 页码: 186
Authors:  Wang Bei;  Chen Jinyu;  Zhang Shihua
Favorite  |  View/Download:108/0  |  Submit date:2020/01/10
Integrative analysis for identifying joint modular patterns of gene-expression and drug-response data 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 11, 页码: 1724-1732
Authors:  Chen, Jinyu;  Zhang, Shihua
Favorite  |  View/Download:84/0  |  Submit date:2018/07/30
A Two-Stage Method to Identify Joint Modules From Matched MicroRNA and mRNA Expression Data 期刊论文
IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2016, 卷号: 15, 期号: 4, 页码: 362-370
Authors:  Min, Wenwen;  Liu, Juan;  Luo, Fei;  Zhang, Shihua
Favorite  |  View/Download:90/0  |  Submit date:2018/07/30
L-0-penalized singular value decomposition (L-0-SVD)  miRNA cluster  miRNA-gene joint module  multiple-output sparse group lasso  
IIIDB: a database for isoform-isoform interactions and isoform network modules 期刊论文
BMC Genomics, 2015, 卷号: 16, 期号: Suppl 2
Authors:  Tseng,Yu-Ting;  Li,Wenyuan;  Chen,Ching-Hsien;  Zhang,Shihua;  Chen,Jeremy JW;  Zhou,Xianghong Jasmine;  Liu,Chun-Chi
Favorite  |  View/Download:68/0  |  Submit date:2018/07/30