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Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 12
Authors:  Dong, Kangning;  Zhang, Shihua
Favorite  |  View/Download:25/0  |  Submit date:2022/06/21
Matrix Integrative Analysis (MIA) of Multiple Genomic Data for Modular Patterns 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 9, 页码: 12
Authors:  Chen, Jinyu;  Zhang, Shihua
Favorite  |  View/Download:105/0  |  Submit date:2018/07/30
bioinformatics  multi-dimensional genomics  matrix integrative analysis  data integration  module discovery  non-negative matrix factorization (NMF)  partial least squares (PLS)  
bmtkatoolkitfordeterminingmodulesinbiologicalbipartitenetworks 期刊论文
quantitativebiology, 2018, 卷号: 6, 期号: 2, 页码: 186
Authors:  Wang Bei;  Chen Jinyu;  Zhang Shihua
Favorite  |  View/Download:108/0  |  Submit date:2020/01/10
Integrative analysis for identifying joint modular patterns of gene-expression and drug-response data 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 11, 页码: 1724-1732
Authors:  Chen, Jinyu;  Zhang, Shihua
Favorite  |  View/Download:85/0  |  Submit date:2018/07/30
A Two-Stage Method to Identify Joint Modules From Matched MicroRNA and mRNA Expression Data 期刊论文
IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2016, 卷号: 15, 期号: 4, 页码: 362-370
Authors:  Min, Wenwen;  Liu, Juan;  Luo, Fei;  Zhang, Shihua
Favorite  |  View/Download:91/0  |  Submit date:2018/07/30
L-0-penalized singular value decomposition (L-0-SVD)  miRNA cluster  miRNA-gene joint module  multiple-output sparse group lasso  
IIIDB: a database for isoform-isoform interactions and isoform network modules 期刊论文
BMC Genomics, 2015, 卷号: 16, 期号: Suppl 2
Authors:  Tseng,Yu-Ting;  Li,Wenyuan;  Chen,Ching-Hsien;  Zhang,Shihua;  Chen,Jeremy JW;  Zhou,Xianghong Jasmine;  Liu,Chun-Chi
Favorite  |  View/Download:69/0  |  Submit date:2018/07/30
Biomolecular network querying: a promising approach in systems biology 期刊论文
BMC SYSTEMS BIOLOGY, 2008, 卷号: 2, 页码: 6
Authors:  Zhang, Shihua;  Zhang, Xiang-Sun;  Chen, Luonan
Favorite  |  View/Download:71/0  |  Submit date:2018/07/30
Hubs with Network Motifs Organize Modularity Dynamically in the Protein-Protein Interaction Network of Yeast 期刊论文
PLOS ONE, 2007, 卷号: 2, 期号: 11, 页码: 9
Authors:  Jin, Guangxu;  Zhang, Shihua;  Zhang, Xiang-Sun;  Chen, Luonan
Favorite  |  View/Download:68/0  |  Submit date:2018/07/30