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A kernel non-negative matrix factorization framework for single cell clustering 期刊论文
APPLIED MATHEMATICAL MODELLING, 2021, 卷号: 90, 页码: 875-888
作者:  Jiang, Hao;  Yi, Ming;  Zhang, Shihua
收藏  |  浏览/下载：124/0  |  提交时间：2021/04/26
Single cell RNA-sequencing  Kernel non-negative matrix factorization  Cellular heterogeneity  
Probe Efficient Feature Representation of Gapped K-mer Frequency Vectors from Sequences Using Deep Neural Networks 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 657-667
作者:  Cao, Zhen;  Zhang, Shihua
收藏  |  浏览/下载：180/0  |  提交时间：2020/05/24
DNA  Bioinformatics  Kernel  Feature extraction  Support vector machines  Genomics  Task analysis  Bioinformatics  machine learning  gapped k-mer  deep neural network  transcription factor binding site prediction  
Detecting disease associated modules and prioritizing active genes based on high throughput data 期刊论文
BMC BIOINFORMATICS, 2010, 卷号: 11, 页码: 12
作者:  Qiu, Yu-Qing;  Zhang, Shihua;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：126/0  |  提交时间：2018/07/30
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures 期刊论文
NEUROCOMPUTING, 2008, 卷号: 72, 期号: 1-3, 页码: 134-141
作者:  Wang, Rui-Sheng;  Zhang, Shihua;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：132/0  |  提交时间：2018/07/30
Complex networks  Biological networks  Community structure  Nonnegative matrix factorization  Similarity measure  
Quantitative function for community detection 期刊论文
PHYSICAL REVIEW E, 2008, 卷号: 77, 期号: 3, 页码: 9
作者:  Li, Zhenping;  Zhang, Shihua;  Wang, Rui-Sheng;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：114/0  |  提交时间：2018/07/30
Uncovering fuzzy community structure in complex networks 期刊论文
PHYSICAL REVIEW E, 2007, 卷号: 76, 期号: 4, 页码: 7
作者:  Zhang, Shihua;  Wang, Rui-Sheng;  Zhang, Xiang-Sun
收藏  |  浏览/下载：125/0  |  提交时间：2018/07/30
Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods 期刊论文
COMPUTATIONAL INTELLIGENCE AND BIOINFORMATICS, PT 3, PROCEEDINGS, 2006, 卷号: 4115, 页码: 514-524
作者:  Zhang, Shi-Hua;  Ning, Xue-Mei;  Liu, Hong-Wei;  Zhang, Xiang-Sun
收藏  |  浏览/下载：91/0  |  提交时间：2018/07/30