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Interaction-based transcriptome analysis via differential network inference 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 11
作者:  Leng, Jiacheng;  Wu, Ling-Yun
收藏  |  浏览/下载：46/0  |  提交时间：2023/02/07
differential network inference  differential expression analysis  interaction-based transcriptome analysis  
Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF 期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
作者:  Zhou, Guofeng;  Sun, Shaoyan;  Yuan, Qiuyue;  Zhang, Run;  Jiang, Ping;  Li, Guangyu;  Wang, Yong;  Li, Xiao
收藏  |  浏览/下载：126/0  |  提交时间：2021/10/26
heart failure with preserved ejection fraction  differentially expressed genes  differentially correlated gene pairs  differential network  molecular docking  
GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 682-696
作者:  Shao, Yi;  Chen, Chunyan;  Shen, Hao;  He, Bin Z.;  Yu, Daqi;  Jiang, Shuai;  Zhao, Shilei;  Gao, Zhiqiang;  Zhu, Zhenglin;  Chen, Xi;  Fu, Yan;  Chen, Hua;  Gao, Ge;  Long, Manyuan;  Zhang, Yong E.
收藏  |  浏览/下载：191/0  |  提交时间：2020/01/10
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：181/0  |  提交时间：2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
Network-Regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 卷号: 15, 期号: 3, 页码: 944-953
作者:  Min, Wenwen;  Liu, Juan;  Zhang, Shihua
收藏  |  浏览/下载：248/0  |  提交时间：2018/07/30
Sparse logistic regression  network-regularized penalty  survival risk prediction  feature selection  
Gene co-opening network deciphers gene functional relationships 期刊论文
MOLECULAR BIOSYSTEMS, 2017, 卷号: 13, 期号: 11, 页码: 2428-2439
作者:  Li, Wenran;  Wang, Meng;  Sun, Jinghao;  Wang, Yong;  Jiang, Rui
收藏  |  浏览/下载：142/0  |  提交时间：2018/07/30
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 14
作者:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
收藏  |  浏览/下载：131/0  |  提交时间：2018/07/30
Gene ontology  Enrichment analysis  Network-based probabilistic generative model  Integer programming  Complex diseases  
Modeling gene regulation from paired expression and chromatin accessibility data 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 卷号: 114, 期号: 25, 页码: E4914-E4923
作者:  Duren, Zhana;  Chen, Xi;  Jiang, Rui;  Wang, Yong;  Wong, Wing Hung
收藏  |  浏览/下载：157/0  |  提交时间：2018/07/30
gene regulation  transcription factor  regulatory element  chromatin regulator  chromatin activity  
A systematic method to identify modulation of transcriptional regulation via chromatin activity reveals regulatory network during mESC differentiation 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 12
作者:  Duren, Zhana;  Wang, Yong
收藏  |  浏览/下载：141/0  |  提交时间：2018/07/30
IIIDB: a database for isoform-isoform interactions and isoform network modules 期刊论文
BMC Genomics, 2015, 卷号: 16, 期号: Suppl 2
作者:  Tseng,Yu-Ting;  Li,Wenyuan;  Chen,Ching-Hsien;  Zhang,Shihua;  Chen,Jeremy JW;  Zhou,Xianghong Jasmine;  Liu,Chun-Chi
收藏  |  浏览/下载：141/0  |  提交时间：2018/07/30