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Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data 期刊论文
NATURE BIOTECHNOLOGY, 2021, 页码: 18
作者:  Sun, Duanchen;  Guan, Xiangnan;  Moran, Amy E.;  Wu, Ling-Yun;  Qian, David Z.;  Schedin, Pepper;  Dai, Mu-Shui;  Danilov, Alexey, V;  Alumkal, Joshi J.;  Adey, Andrew C.;  Spellman, Paul T.;  Xia, Zheng
收藏  |  浏览/下载：138/0  |  提交时间：2022/04/02
Discovering cooperative biomarkers for heterogeneous complex disease diagnoses 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 89-101
作者:  Sun, Duanchen;  Ren, Xianwen;  Ari, Eszter;  Korcsmaros, Tamas;  Csermely, Peter;  Wu, Ling-Yun
收藏  |  浏览/下载：285/0  |  提交时间：2019/03/05
heterogeneous diseases  cancer biomarker  network-based  cooperative biomarker  gene expression  
CEA: Combination-based gene set functional enrichment analysis 期刊论文
SCIENTIFIC REPORTS, 2018, 卷号: 8, 页码: 13
作者:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
收藏  |  浏览/下载：251/0  |  提交时间：2018/10/07
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 14
作者:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
收藏  |  浏览/下载：131/0  |  提交时间：2018/07/30
Gene ontology  Enrichment analysis  Network-based probabilistic generative model  Integer programming  Complex diseases  
Discovery of co-occurring driver pathways in cancer 期刊论文
BMC Bioinformatics, 2014, 卷号: 15, 期号: 1
作者:  Zhang,Junhua;  Wu,Ling-Yun;  Zhang,Xiang-Sun;  Zhang,Shihua
收藏  |  浏览/下载：138/0  |  提交时间：2018/07/30
Corbi: a new R package for biological network alignment and querying 期刊论文
BMC Systems Biology, 2013, 卷号: 7, 期号: Suppl 2
作者:  Huang,Qiang;  Wu,Ling-Yun;  Zhang,Xiang-Sun
收藏  |  浏览/下载：146/0  |  提交时间：2018/07/30
gomafunctionalenrichmentanalysistoolbasedongomodules 期刊论文
chinesejournalofcancer, 2013, 卷号: 32, 期号: 4, 页码: 195
作者:  Huang Qiang;  Wu Lingyun;  Wang Yong;  Zhang Xiangsun
收藏  |  浏览/下载：169/0  |  提交时间：2020/01/10
An efficient network querying method based on conditional random fields 期刊论文
BIOINFORMATICS, 2011, 卷号: 27, 期号: 22, 页码: 3173-3178
作者:  Huang, Qiang;  Wu, Ling-Yun;  Zhang, Xiang-Sun
收藏  |  浏览/下载：126/0  |  提交时间：2018/07/30
NOA: a novel Network Ontology Analysis method 期刊论文
NUCLEIC ACIDS RESEARCH, 2011, 卷号: 39, 期号: 13, 页码: 12
作者:  Wang, Jiguang;  Huang, Qiang;  Liu, Zhi-Ping;  Wang, Yong;  Wu, Ling-Yun;  Chen, Luonan;  Zhang, Xiang-Sun
收藏  |  浏览/下载：154/0  |  提交时间：2018/07/30
SANA: an algorithm for sequential and non-sequential protein structure alignment 期刊论文
AMINO ACIDS, 2010, 卷号: 39, 期号: 2, 页码: 417-425
作者:  Wang, Lin;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：153/0  |  提交时间：2018/07/30
Protein structure alignment  Fold comparison  Circular permutation  Functional sites