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IDLDA: An Improved Diffusion Model for Predicting LncRNA-Disease Associations 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 页码: 10
作者:  Wang, Qi;  Yan, Guiying
收藏  |  浏览/下载：168/0  |  提交时间：2020/05/24
long non-coding RNA  disease  association prediction  computational prediction model  diffusion model  
Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2019, 卷号: 15, 期号: 12, 页码: 20
作者:  Wang, Yongcui;  Chen, Shilong;  Chen, Luonan;  Wang, Yong
收藏  |  浏览/下载：181/0  |  提交时间：2020/05/24
DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11
作者:  Zeng, Wanwen;  Chen, Xi;  Duren, Zhana;  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
收藏  |  浏览/下载：180/0  |  提交时间：2020/01/10
DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 15, 页码: 2593-2601
作者:  Chen, Ziwei;  An, Shaokun;  Bai, Xiangqi;  Gong, Fuzhou;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：190/0  |  提交时间：2020/01/10
Learning common and specific patterns from data of multiple interrelated biological scenarios with matrix factorization 期刊论文
NUCLEIC ACIDS RESEARCH, 2019, 卷号: 47, 期号: 13, 页码: 6606-6617
作者:  Zhang, Lihua;  Zhang, Shihua
收藏  |  浏览/下载：191/0  |  提交时间：2020/01/10
Model-based understanding of single-cell CRISPR screening 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11
作者:  Duan, Bin;  Zhou, Chi;  Zhu, Chengyu;  Yu, Yifei;  Li, Gaoyang;  Zhang, Shihua;  Zhang, Chao;  Ye, Xiangyun;  Ma, Hanhui;  Qu, Shen;  Zhang, Zhiyuan;  Wang, Ping;  Sun, Shuyang;  Liu, Qi
收藏  |  浏览/下载：185/0  |  提交时间：2020/01/10
TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data 期刊论文
BMC GENOMICS, 2019, 卷号: 20, 页码: 16
作者:  An, Shaokun;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：183/0  |  提交时间：2019/10/28
Nonlinear dimensionality reduction  Elastic embedding  Visualization  Single-cell RNA sequencing  Time series  Cell fate decisions  Gene expression pattern  Oscillation  In-group proportion