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Deep graph level anomaly detection with contrastive learning 期刊论文
SCIENTIFIC REPORTS, 2022, 卷号: 12, 期号: 1, 页码: 11
作者:  Luo, Xuexiong;  Wu, Jia;  Yang, Jian;  Xue, Shan;  Peng, Hao;  Zhou, Chuan;  Chen, Hongyang;  Li, Zhao;  Sheng, Quan Z.
收藏  |  浏览/下载：71/0  |  提交时间：2023/02/07
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：182/0  |  提交时间：2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data 期刊论文
BMC GENOMICS, 2018, 卷号: 19, 页码: 16
作者:  Zhang, Lirong;  Xue, Gaogao;  Liu, Junjie;  Li, Qianzhong;  Wang, Yong
收藏  |  浏览/下载：272/0  |  提交时间：2019/01/11
Transcription factor  Histone modification  Co-localization  Dynamics  
Predicting disease-related genes by path structure and community structure in protein-protein networks 期刊论文
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2018, 页码: 22
作者:  Hu, Ke;  Hu, Jing-Bo;  Tang, Liang;  Xiang, Ju;  Ma, Jin-Long;  Gao, Yuan-Yuan;  Li, Hui-Jia;  Zhang, Yan
收藏  |  浏览/下载：147/0  |  提交时间：2019/01/11
random graphs  networks  protein interaction networks  
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 14
作者:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
收藏  |  浏览/下载：134/0  |  提交时间：2018/07/30
Gene ontology  Enrichment analysis  Network-based probabilistic generative model  Integer programming  Complex diseases  
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 13
作者:  Guo, Yuzhen;  Tao, Fengying;  Wu, Zikai;  Wang, Yong
收藏  |  浏览/下载：160/0  |  提交时间：2018/07/30
Protein structure prediction  HP model  3D lattice  Particle swarm optimization  Protein stability  
RRCRank: a fusion method using rank strategy for residue-residue contact prediction 期刊论文
BMC Bioinformatics, 2017, 卷号: 18, 期号: 1
作者:  Jing,Xiaoyang;  Dong,Qiwen;  Lu,Ruqian
收藏  |  浏览/下载：123/0  |  提交时间：2018/07/30
Protein residue-residue contact prediction  Learning-to-rank  Fusion method  
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 13
作者:  Liu, Zhi-Ping;  Liu, Shutang;  Chen, Ruitang;  Huang, Xiaopeng;  Wu, Ling-Yun
收藏  |  浏览/下载：147/0  |  提交时间：2018/07/30
RNA-binding pocket  Local structure classification  Structural alignment  Network clustering  Structure motif  
Improved protein-protein interactions prediction via weighted sparse representation model combining continuous wavelet descriptor and PseAA composition 期刊论文
BMC SYSTEMS BIOLOGY, 2016, 卷号: 10, 页码: 10
作者:  Huang, Yu-An;  You, Zhu-Hong;  Chen, Xing;  Yan, Gui-Ying
收藏  |  浏览/下载：163/0  |  提交时间：2018/07/30
Protein-protein interactions  Protein sequence  Continuous wavelet transform  Sparse representation based classifier  
An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data 期刊论文
Algorithms for Molecular Biology, 2016, 卷号: 11, 期号: 1
作者:  Lu,Jianbo;  Xu,Guoliang;  Zhang,Shihua;  Lu,Benzhuo
收藏  |  浏览/下载：133/0  |  提交时间：2018/07/30
Superposition  Protein structure alignment  Iterative closest point