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DeepDigest: Prediction of Protein Proteolytic Digestion with Deep Learning 期刊论文
ANALYTICAL CHEMISTRY, 2021, 卷号: 93, 期号: 15, 页码: 6094-6103
作者:  Yang, Jinghan;  Gao, Zhiqiang;  Ren, Xiuhan;  Sheng, Jie;  Xu, Ping;  Chang, Cheng;  Fu, Yan
收藏  |  浏览/下载：141/0  |  提交时间：2021/10/26
Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana 期刊论文
NPJ SYSTEMS BIOLOGY AND APPLICATIONS, 2019, 卷号: 5, 页码: 11
作者:  Duren, Zhana;  Wang, Yaling;  Wang, Jiguang;  Zhao, Xing-Ming;  Lv, Le;  Li, Xiaobo;  Liu, Jingdong;  Zhu, Xin-Guang;  Chen, Luonan;  Wang, Yong
收藏  |  浏览/下载：161/0  |  提交时间：2020/05/24
Simple tricks of convolutional neural network architectures improve DNA-protein binding prediction 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 11, 页码: 1837-1843
作者:  Cao, Zhen;  Zhang, Shihua
收藏  |  浏览/下载：186/0  |  提交时间：2020/01/10
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：179/0  |  提交时间：2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
Quality control of single amino acid variations detected by tandem mass spectrometry 期刊论文
JOURNAL OF PROTEOMICS, 2018, 卷号: 187, 页码: 144-151
作者:  Yi, Xinpei;  Wang, Bo;  An, Zhiwu;  Gong, Fuzhou;  Li, Jing;  Fu, Yan
收藏  |  浏览/下载：275/0  |  提交时间：2018/11/16
Single amino acid variations  Mass spectrometry  Peptide identification  False discovery rate  Unrestrictive mass shift relocalization  
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 13
作者:  Guo, Yuzhen;  Tao, Fengying;  Wu, Zikai;  Wang, Yong
收藏  |  浏览/下载：156/0  |  提交时间：2018/07/30
Protein structure prediction  HP model  3D lattice  Particle swarm optimization  Protein stability  
Gly-PseAAC: Identifying protein lysine glycation through sequences 期刊论文
GENE, 2017, 卷号: 602, 页码: 1-7
作者:  Xu, Yan;  Li, Li;  Ding, Jun;  Wu, Ling-Yun;  Mai, Guoqin;  Zhou, Fengfeng
收藏  |  浏览/下载：156/0  |  提交时间：2018/07/30
Glycation  Amino acid propensity  Support Vector Machine  
Accurate prediction of protein-protein interactions by integrating potential evolutionary information embedded in PSSM profile and discriminative vector machine classifier 期刊论文
ONCOTARGET, 2017, 卷号: 8, 期号: 14, 页码: 23638-23649
作者:  Li, Zheng-Wei;  You, Zhu-Hong;  Chen, Xing;  Li, Li-Ping;  Huang, De-Shuang;  Yan, Gui-Ying;  Nie, Ru;  Huang, Yu-An
收藏  |  浏览/下载：144/0  |  提交时间：2018/07/30
disease  position-specific scoring matrix  weber local descriptor  cancer  protein-protein interactions  
Improved protein-protein interactions prediction via weighted sparse representation model combining continuous wavelet descriptor and PseAA composition 期刊论文
BMC SYSTEMS BIOLOGY, 2016, 卷号: 10, 页码: 10
作者:  Huang, Yu-An;  You, Zhu-Hong;  Chen, Xing;  Yan, Gui-Ying
收藏  |  浏览/下载：159/0  |  提交时间：2018/07/30
Protein-protein interactions  Protein sequence  Continuous wavelet transform  Sparse representation based classifier  
An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data 期刊论文
Algorithms for Molecular Biology, 2016, 卷号: 11, 期号: 1
作者:  Lu,Jianbo;  Xu,Guoliang;  Zhang,Shihua;  Lu,Benzhuo
收藏  |  浏览/下载：131/0  |  提交时间：2018/07/30
Superposition  Protein structure alignment  Iterative closest point