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EFFICIENT GENERATION OF MEMBRANE AND SOLVENT TETRAHEDRAL MESHES FOR ION CHANNEL FINITE ELEMENT CALCULATION 期刊论文
INTERNATIONAL JOURNAL OF NUMERICAL ANALYSIS AND MODELING, 2022, 卷号: 19, 期号: 6, 页码: 887-906
作者:  Chao, Zhen;  Gui, Sheng;  Lu, Benzhuo;  Xie, Dexuan
收藏  |  浏览/下载:34/0  |  提交时间:2023/02/07
Finite element method  Poisson-Nernst-Planck equations  ion channel  membrane mesh generation  tetrahedral mesh  
An inverse averaging finite element method for solving three-dimensional Poisson-Nernst-Planck equations in nanopore system simulations 期刊论文
JOURNAL OF CHEMICAL PHYSICS, 2021, 卷号: 155, 期号: 19, 页码: 13
作者:  Zhang, Qianru;  Wang, Qin;  Zhang, Linbo;  Lu, Benzhuo
收藏  |  浏览/下载:105/0  |  提交时间:2022/04/02
A stabilized finite element method for the Poisson-Nernst-Planck equations in three-dimensional ion channel simulations 期刊论文
APPLIED MATHEMATICS LETTERS, 2021, 卷号: 111, 页码: 9
作者:  Wang, Qin;  Li, Hongliang;  Zhang, Linbo;  Lu, Benzhuo
收藏  |  浏览/下载:181/0  |  提交时间:2021/01/14
Poisson-Nernst-Planck  Stabilized finite element method  SUPG  interior penalty  
Model reduction-based initialization methods for solving the Poisson-Nernst-Plank equations in three-dimensional ion channel simulations 期刊论文
JOURNAL OF COMPUTATIONAL PHYSICS, 2020, 卷号: 419, 页码: 18
作者:  Zhang, Qianru;  Gui, Sheng;  Li, Hongliang;  Lu, Benzhuo
收藏  |  浏览/下载:151/0  |  提交时间:2021/04/26
Reduced model  Poisson-Nernst-Planck  Smoluchowski-Poisson-Boltzmann  Initialization  Linear approximation of PNP model  Finite element method  
A DECOUPLING TWO-GRID METHOD FOR THE STEADY-STATE POISSON-NERNST-PLANCK EQUATIONS 期刊论文
JOURNAL OF COMPUTATIONAL MATHEMATICS, 2019, 卷号: 37, 期号: 4, 页码: 556-578
作者:  Yang, Ying;  Lu, Benzhuo;  Xie, Yan
收藏  |  浏览/下载:128/0  |  提交时间:2020/05/24
Poisson-Nernst-Planck equations  Two-grid finite element method  Decoupling method  Error analysis  Gummel iteration  
A Time-Dependent Finite Element Algorithm for Simulations of Ion Current Rectification and Hysteresis Properties of 3D Nanopore System 期刊论文
IEEE TRANSACTIONS ON NANOTECHNOLOGY, 2018, 卷号: 17, 期号: 3, 页码: 513-519
作者:  Xu, Jingjie;  Lu, Benzhuo;  Zhang, Linbo
收藏  |  浏览/下载:160/0  |  提交时间:2018/07/30
3D nanopore  analytical test  backward Euler  FEM  ICR  numerical simulation  PNP equations  varying voltage  
A Local Approximation of Fundamental Measure Theory Incorporated into Three Dimensional Poisson-Nernst-Planck Equations to Account for Hard Sphere Repulsion Among Ions 期刊论文
JOURNAL OF STATISTICAL PHYSICS, 2016, 卷号: 163, 期号: 1, 页码: 156-174
作者:  Qiao, Yu;  Liu, Xuejiao;  Chen, Minxin;  Lu, Benzhuo
收藏  |  浏览/下载:147/0  |  提交时间:2018/07/30
Hard sphere repulsion  Three dimensional fundamental measure theory  Poisson-Nernst-Planck equations  Size-modified PNP  Equation of state  
Poisson-Nernst-Planck Equations for Simulating Biomolecular Diffusion-Reaction Processes II: Size Effects on Ionic Distributions and Diffusion-Reaction Rates 期刊论文
BIOPHYSICAL JOURNAL, 2011, 卷号: 100, 期号: 10, 页码: 2475-2485
作者:  Lu, Benzhuo;  Zhou, Y. C.
收藏  |  浏览/下载:95/0  |  提交时间:2018/07/30
Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes I: Finite element solutions 期刊论文
JOURNAL OF COMPUTATIONAL PHYSICS, 2010, 卷号: 229, 期号: 19, 页码: 6979-6994
作者:  Lu, Benzhuo;  Holst, Michael J.;  McCammon, J. Andrew;  Zhou, Y. C.
收藏  |  浏览/下载:129/0  |  提交时间:2018/07/30
Electrodiffusion  Poisson-Nernst-Planck equations  Finite element  Singular charges  Molecular surface  Boundary condition  Conditioning