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EFFICIENT GENERATION OF MEMBRANE AND SOLVENT TETRAHEDRAL MESHES FOR ION CHANNEL FINITE ELEMENT CALCULATION 期刊论文
INTERNATIONAL JOURNAL OF NUMERICAL ANALYSIS AND MODELING, 2022, 卷号: 19, 期号: 6, 页码: 887-906
作者:  Chao, Zhen;  Gui, Sheng;  Lu, Benzhuo;  Xie, Dexuan
收藏  |  浏览/下载：33/0  |  提交时间：2023/02/07
Finite element method  Poisson-Nernst-Planck equations  ion channel  membrane mesh generation  tetrahedral mesh  
DASHMM Accelerated Adaptive Fast Multipole Poisson-Boltzmann Solver on Distributed Memory Architecture 期刊论文
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2019, 卷号: 25, 期号: 4, 页码: 1235-1258
作者:  Zhang, Bo;  DeBuhr, Jackson;  Niedzielski, Drake;  Mayolo, Silvio;  Lu, Benzhuo;  Sterling, Thomas
收藏  |  浏览/下载：180/0  |  提交时间：2019/03/05
Poisson-Boltzmann equation  boundary element method  DASHMM  distributed computing  
Stability of Nonlinear Wave Patterns to the Bipolar Vlasov-Poisson-Boltzmann System 期刊论文
ARCHIVE FOR RATIONAL MECHANICS AND ANALYSIS, 2018, 卷号: 228, 期号: 1, 页码: 39-127
作者:  Li, Hailiang;  Wang, Yi;  Yang, Tong;  Zhong, Mingying
收藏  |  浏览/下载：177/0  |  提交时间：2018/07/30
A Finite Element Solution of Lateral Periodic Poisson-Boltzmann Model for Membrane Channel Proteins 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 卷号: 19, 期号: 3, 页码: 17
作者:  Ji, Nan;  Liu, Tiantian;  Xu, Jingjie;  Shen, Longzhu Q.;  Lu, Benzhuo
收藏  |  浏览/下载：170/0  |  提交时间：2018/07/30
laterally periodic Poisson-Boltzmann model  finite element method  membrane channel proteins  pore region  solvation  
ANALYSIS OF THE MEAN FIELD FREE ENERGY FUNCTIONAL OF ELECTROLYTE SOLUTION WITH NONHOMOGENOUS BOUNDARY CONDITIONS AND THE GENERALIZED PB/PNP EQUATIONS WITH INHOMOGENEOUS DIELECTRIC PERMITTIVITY 期刊论文
SIAM JOURNAL ON APPLIED MATHEMATICS, 2018, 卷号: 78, 期号: 2, 页码: 1131-1154
作者:  Liu, Xuejiao;  Qiao, Yu;  Lu, Benzhou
收藏  |  浏览/下载：168/0  |  提交时间：2018/07/30
free energy functional  electrolyte  boundary conditions  variable dielectric  generalized Poisson-Nernst-Planck/Poisson-Boltzmann equations  energy law  
TMSmesh: A Robust Method for Molecular Surface Mesh Generation Using a Trace Technique 期刊论文
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2011, 卷号: 7, 期号: 1, 页码: 203-212
作者:  Chen, Minxin;  Lu, Benzhuo
收藏  |  浏览/下载：93/0  |  提交时间：2018/07/30
AFMPB: An adaptive fast multipole, Poisson-Boltzmann solver for calculating electrostatics in biomolecular systems 期刊论文
COMPUTER PHYSICS COMMUNICATIONS, 2010, 卷号: 181, 期号: 6, 页码: 1150-1160
作者:  Lu, Benzhuo;  Cheng, Xiaolin;  Huang, Jingfang;  McCammon, J. Andrew
收藏  |  浏览/下载：125/0  |  提交时间：2018/07/30
Poisson-Boltzmann equation  Boundary integral equation  Node-patch method  Krylov subspace methods  Fast multipole methods  Diagonal translations  
Two-scale finite element Green's function approximations with applications to electrostatic potential computation 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2010, 卷号: 23, 期号: 1, 页码: 177-193
作者:  Yang, Ying;  Zhou, Aihui
收藏  |  浏览/下载：88/0  |  提交时间：2018/07/30
Error analysis  finite element  Green's function  Poisson-Boltzmann equation  two-scale  
Image Charge Methods for a Three-Dielectric-Layer Hybrid Solvation Model of Biomolecules 期刊论文
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2009, 卷号: 6, 期号: 5, 页码: 955-977
作者:  Qin, Peihua;  Xu, Zhenli;  Cai, Wei;  Jacobs, Donald
收藏  |  浏览/下载：111/0  |  提交时间：2018/07/30
Image charge methods  distance-dependent dielectric permittivity  hybrid implicit/explicit model  reaction field  Poisson-Boltzmann equation  protein  
An Adaptive Fast Multipole Boundary Element Method for Poisson-Boltzmann Electrostatics 期刊论文
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2009, 卷号: 5, 期号: 6, 页码: 1692-1699
作者:  Lu, Benzhuo;  Cheng, Xiaolin;  Huang, Jingfang;  McCammon, J. Andrew
收藏  |  浏览/下载：109/0  |  提交时间：2018/07/30