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MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 6, 页码: 14
作者:  Zou, Meng;  Duren, Zhana;  Yuan, Qiuyue;  Li, Henry;  Hutchins, Andrew Paul;  Wong, Wing Hung;  Wang, Yong
收藏  |  浏览/下载:136/0  |  提交时间:2022/04/02
cell type-specific marker  TFs  surface markers  dimension reduction  hierarchical topology  
Integrating distal and proximal information to predict gene expression via a densely connected convolutional neural network 期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 期号: 2, 页码: 496-503
作者:  Zeng, Wanwen;  Wang, Yong;  Jiang, Rui
收藏  |  浏览/下载:165/0  |  提交时间:2020/06/30
Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2019, 卷号: 15, 期号: 12, 页码: 20
作者:  Wang, Yongcui;  Chen, Shilong;  Chen, Luonan;  Wang, Yong
收藏  |  浏览/下载:181/0  |  提交时间:2020/05/24
Does Moxa Smoke Have Significant Effect on the Acupuncturist's Respiratory System? A Population-Based Study 期刊论文
EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE, 2019, 卷号: 2019, 页码: 10
作者:  Yu, Chang;  Zhang, Ning;  Zhu, Weikang;  Zhang, Yueyue;  Yang, Jiao;  Wang, Yong;  Song, Xiaoge;  Hu, Ling;  Wu, Zijian;  Liu, Qi;  Tang, Yong;  Wu, Qiaofeng;  Yu, Shuguang
收藏  |  浏览/下载:277/0  |  提交时间:2020/01/10
Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana 期刊论文
NPJ SYSTEMS BIOLOGY AND APPLICATIONS, 2019, 卷号: 5, 页码: 11
作者:  Duren, Zhana;  Wang, Yaling;  Wang, Jiguang;  Zhao, Xing-Ming;  Lv, Le;  Li, Xiaobo;  Liu, Jingdong;  Zhu, Xin-Guang;  Chen, Luonan;  Wang, Yong
收藏  |  浏览/下载:162/0  |  提交时间:2020/05/24
Integrating data- and model-driven strategies in systems biology INTRODUCTION 期刊论文
BMC SYSTEMS BIOLOGY, 2018, 卷号: 12, 页码: 3
作者:  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载:174/0  |  提交时间:2018/07/30
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 13
作者:  Guo, Yuzhen;  Tao, Fengying;  Wu, Zikai;  Wang, Yong
收藏  |  浏览/下载:157/0  |  提交时间:2018/07/30
Protein structure prediction  HP model  3D lattice  Particle swarm optimization  Protein stability  
Extended particle swarm optimisation method for folding protein on triangular lattice 期刊论文
IET SYSTEMS BIOLOGY, 2016, 卷号: 10, 期号: 1, 页码: 30-33
作者:  Guo, Yuzhen;  Wu, Zikai;  Wang, Ying;  Wang, Yong
收藏  |  浏览/下载:133/0  |  提交时间:2018/07/30
proteins  molecular biophysics  molecular configurations  particle swarm optimisation  bioinformatics  extended particle swarm optimisation method  triangular lattice  protein structure prediction problem  two-dimensional hydrophobic-polar model  noncompact conformation  amino acid sequence  single point adjustment strategy  protein folding  
Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context 期刊论文
BMC SYSTEMS BIOLOGY, 2011, 卷号: 5, 页码: 11
作者:  Wang, Yong-Cui;  Wang, Yong;  Yang, Zhi-Xia;  Deng, Nai-Yang
收藏  |  浏览/下载:133/0  |  提交时间:2018/07/30
Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2011, 卷号: 269, 期号: 1, 页码: 174-180
作者:  Chen, Ruoying;  Zhang, Zhiwang;  Wu, Di;  Zhang, Peng;  Zhang, Xinyang;  Wang, Yong;  Shi, Yong
收藏  |  浏览/下载:212/0  |  提交时间:2018/07/30
Binding free energy  Alanine mutation  Residue's features  Combined model  Predictive performance