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Networked Knowledge and Complex Networks: An Engineering View 期刊论文
IEEE-CAA JOURNAL OF AUTOMATICA SINICA, 2022, 卷号: 9, 期号: 8, 页码: 1366-1383
作者:  Lu, Jinhu;  Wen, Guanghui;  Lu, Ruqian;  Wang, Yong;  Zhang, Songmao
收藏  |  浏览/下载：116/0  |  提交时间：2023/02/07
Complex network  knowledge graph  networked knowledge  neural network  
Prediction of the transcription factor binding sites with meta-learning 期刊论文
METHODS, 2022, 卷号: 203, 页码: 207-213
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：170/0  |  提交时间：2023/02/07
Convolution neural network  Transcription factor binding sites  Meta learning  Noisy labels data  
Adversarial Information Bottleneck 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2022, 页码: 10
作者:  Zhai, Penglong;  Zhang, Shihua
收藏  |  浏览/下载：53/0  |  提交时间：2023/02/07
Robustness  Optimization  Mutual information  Deep learning  Perturbation methods  Training  Task analysis  Adversarial robustness  deep learning  hyperparameter selection  information bottleneck (IB)  
Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 12
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：101/0  |  提交时间：2022/06/21
Disease category-specific annotation of variants using an ensemble learning framework 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 15
作者:  Cao, Zhen;  Huang, Yanting;  Duan, Ran;  Jin, Peng;  Qin, Zhaohui S.;  Zhang, Shihua
收藏  |  浏览/下载：116/0  |  提交时间：2022/06/21
complex disease  disease category  functional annotation  non-coding variant  ensemble learning  
Bayesian Joint Matrix Decomposition for Data Integration with Heterogeneous Noise 期刊论文
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2021, 卷号: 43, 期号: 4, 页码: 1184-1196
作者:  Zhang, Chihao;  Zhang, Shihua
收藏  |  浏览/下载：183/0  |  提交时间：2021/04/26
Matrix decomposition  Bayes methods  Data integration  Inference algorithms  Data models  Data mining  Gaussian distribution  Bayesian methods  matrix decomposition  data integration  variational Bayesian inference  maximum a posterior  
An Integrative Framework for Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2021, 卷号: 18, 期号: 1, 页码: 355-364
作者:  Jing, Fang;  Zhang, Shao-Wu;  Cao, Zhen;  Zhang, Shihua
收藏  |  浏览/下载：167/0  |  提交时间：2021/04/26
Bioinformatics  machine learning  transcription factors binding sites  convolutional neural networks  DNA accessibility  histone modification  
Knowledge-guided unsupervised rhetorical parsing for text summarization 期刊论文
INFORMATION SYSTEMS, 2020, 卷号: 94, 页码: 12
作者:  Hou, Shengluan;  Lu, Ruqian
收藏  |  浏览/下载：165/0  |  提交时间：2021/01/14
Automatic text summarization  Rhetorical structure theory  Domain knowledge base  Attentional encoder-decoder  Natural language processing  
On semi-supervised multiple representation behavior learning 期刊论文
JOURNAL OF COMPUTATIONAL SCIENCE, 2020, 卷号: 46, 页码: 17
作者:  Lu, Ruqian;  Hou, Shengluan
收藏  |  浏览/下载：142/0  |  提交时间：2021/04/26
Semi-supervised learning  Semi-supervised multiple representation behavior learning  Semi-supervised grammar learning  
Spectral Learning Algorithm Reveals Propagation Capability of Complex Networks 期刊论文
IEEE TRANSACTIONS ON CYBERNETICS, 2019, 卷号: 49, 期号: 12, 页码: 4253-4261
作者:  Xu, Shuang;  Wang, Pei;  Zhang, Chun-Xia;  Lu, Jinhu
收藏  |  浏览/下载：175/0  |  提交时间：2020/01/10
Complex network  important node  influential spreader  propagation capability  SpectralRank (SR)