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Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3, 页码: 15
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：113/0  |  提交时间：2022/04/02
cis-regulatory interaction networks  single-cell ATAC-seq  Gaussian graphical LASSO  
Infection-Probability-Dependent Interlayer Interaction Propagation Processes in Multiplex Networks 期刊论文
IEEE TRANSACTIONS ON SYSTEMS MAN CYBERNETICS-SYSTEMS, 2021, 卷号: 51, 期号: 2, 页码: 1085-1096
作者:  Liu, Juan;  Wu, Xiaoqun;  Lu, Jinhu;  Wei, Xiang
收藏  |  浏览/下载：131/0  |  提交时间：2021/04/26
Epidemic threshold  multiplex network  propagation process  spreading rate function (SRF)  
MSTD: an efficient method for detecting multi-scale topological domains from symmetric and asymmetric 3D genomic maps 期刊论文
NUCLEIC ACIDS RESEARCH, 2019, 卷号: 47, 期号: 11, 页码: 11
作者:  Ye, Yusen;  Gao, Lin;  Zhang, Shihua
收藏  |  浏览/下载：158/0  |  提交时间：2020/01/10
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：181/0  |  提交时间：2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
Coordination of multiple rigid bodies under distance-induced interaction topologies 期刊论文
IET CONTROL THEORY AND APPLICATIONS, 2018, 卷号: 12, 期号: 15, 页码: 2067-2075
作者:  Deng, Juan;  Wang, Lin;  Liu, Zhixin;  Hu, Xiaoming
收藏  |  浏览/下载：164/0  |  提交时间：2018/11/16
synchronisation  control system synthesis  graph theory  attitude control  distributed control  multi-robot systems  collision avoidance  velocity control  mobile robots  multiple rigid bodies  distance-induced interaction topologies  coordination control problem  distance-induced neighbour graphs  nearby bodies  angular velocity  linear velocity  attitude synchronisation  
Integrative Analysis of Transcription Factor Combinatorial Interactions Using a Bayesian Tensor Factorization Approach 期刊论文
FRONTIERS IN GENETICS, 2017, 卷号: 8, 页码: 12
作者:  Ye, Yusen;  Gao, Lin;  Zhang, Shihua
收藏  |  浏览/下载：146/0  |  提交时间：2018/07/30
transcription regulation  TF regulatory networks  tensor factorization  integrative analysis of omics data  biological networks  
Modeling gene regulation from paired expression and chromatin accessibility data 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 卷号: 114, 期号: 25, 页码: E4914-E4923
作者:  Duren, Zhana;  Chen, Xi;  Jiang, Rui;  Wang, Yong;  Wong, Wing Hung
收藏  |  浏览/下载：157/0  |  提交时间：2018/07/30
gene regulation  transcription factor  regulatory element  chromatin regulator  chromatin activity