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VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms 期刊论文
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2022, 卷号: 221, 页码: 14
作者:  Hao, Yu;  Wan, Xiaohua;  Yan, Rui;  Liu, Zhiyong;  Li, Jintao;  Zhang, Shihua;  Cui, Xuefeng;  Zhang, Fa
收藏  |  浏览/下载：103/0  |  提交时间：2023/02/07
Cryo-ET  Sub-tomogram averaging  Particle localization  Particle classification  Convolutional neural networks  
Null-free False Discovery Rate Control Using Decoy Permutations 期刊论文
ACTA MATHEMATICAE APPLICATAE SINICA-ENGLISH SERIES, 2022, 卷号: 38, 期号: 2, 页码: 235-253
作者:  He, Kun;  Li, Meng-jie;  Fu, Yan;  Gong, Fu-zhou;  Sun, Xiao-ming
收藏  |  浏览/下载：128/0  |  提交时间：2022/06/21
multiple testing  false discovery rate  null distribution-free  p-value-free  decoy permutations  knockoff filter  
Unambiguous Phosphosite Localization through the Combination of Trypsin and LysargiNase Mirror Spectra in a Large-Scale Phosphoproteome Study 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 6, 页码: 2185-2194
作者:  Xu, Feng;  Yu, Li;  Peng, Xuehui;  Zhang, Junling;  Li, Suzhen;  Liu, Shu;  Yin, Yanan;  An, Zhiwu;  Wang, Fuqiang;  Fu, Yan;  Xu, Ping
收藏  |  浏览/下载：190/0  |  提交时间：2020/09/23
trypsin  LysargiNase  combined spectra  ion coverage  phosphosite localization  PTMiner  
Transfer posterior error probability estimation for peptide identification 期刊论文
BMC Bioinformatics, 2020, 卷号: 21, 期号: 1
作者:  Yi,Xinpei;  Gong,Fuzhou;  Fu,Yan
收藏  |  浏览/下载：145/0  |  提交时间：2020/05/24
Proteomics  Mass spectrometry  Quality control  Posterior error probability  Local false discovery rate  Transfer learning  
Phogly-PseAAC: Prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2015, 卷号: 379, 页码: 10-15
作者:  Xu, Yan;  Ding, Ya-Xin;  Ding, Jun;  Wu, Ling-Yun;  Deng, Nai-Yang
收藏  |  浏览/下载：135/0  |  提交时间：2018/07/30
Amino acid propensity  F-score  Phosphoglycerylation  
Semi-empirical pseudo-likelihood for estimating equations in the presence of missing responses 期刊论文
JOURNAL OF STATISTICAL PLANNING AND INFERENCE, 2011, 卷号: 141, 期号: 8, 页码: 2589-2599
作者:  Wang, Qihua;  Luo, Ruimiao
收藏  |  浏览/下载：116/0  |  提交时间：2018/07/30
Semiparametric model  Pseudo-score estimator  Pseudo-likelihood ratio  
Rigorous assessment and integration of the sequence and structure based features to predict hot spots 期刊论文
BMC BIOINFORMATICS, 2011, 卷号: 12, 页码: 14
作者:  Chen, Ruoying;  Chen, Wenjing;  Yang, Sixiao;  Wu, Di;  Wang, Yong;  Tian, Yingjie;  Shi, Yong
收藏  |  浏览/下载：126/0  |  提交时间：2018/07/30