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Interaction-based transcriptome analysis via differential network inference 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 11
作者:  Leng, Jiacheng;  Wu, Ling-Yun
收藏  |  浏览/下载:46/0  |  提交时间:2023/02/07
differential network inference  differential expression analysis  interaction-based transcriptome analysis  
Frequentist model averaging for undirected Gaussian graphical models 期刊论文
BIOMETRICS, 2022, 页码: 13
作者:  Liu, Huihang;  Zhang, Xinyu
收藏  |  浏览/下载:60/0  |  提交时间:2023/02/07
graphical model  KL divergence  model averaging  model uncertainty  precision matrix  
Dynamic semiparametric transformation models for recurrent event data with a terminal event 期刊论文
STATISTICS IN MEDICINE, 2022, 页码: 16
作者:  Jin, Jin;  Song, Xinyuan;  Sun, Liuquan
收藏  |  浏览/下载:66/0  |  提交时间:2023/02/07
dynamic regression  marginal modeling  recurrent events  terminal event  time-varying coefficients  transformation models  
Augmented weighting estimators for the additive rates model under multivariate recurrent event data with missing event type 期刊论文
STATISTICS IN MEDICINE, 2022, 页码: 14
作者:  Ma, Huijuan;  Pang, Weicai;  Sun, Liuquan;  Xu, Wei
收藏  |  浏览/下载:76/0  |  提交时间:2023/02/07
additive rates model  missing at random  multivariate recurrent event data  Nadaraya-Watson kernel estimator  weighted estimating equation  
Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Shan, Xu;  Chen, Jinyu;  Dong, Kangning;  Zhou, Wei;  Zhang, Shihua
收藏  |  浏览/下载:75/0  |  提交时间:2023/02/07
data integration  single-cell transcriptomics  spatial modular patterns  spatial transcriptomics  
Biomarker interaction selection and disease detection based on multivariate gain ratio 期刊论文
BMC BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 16
作者:  Chu, Xiao;  Jiang, Mao;  Liu, Zhuo-Jun
收藏  |  浏览/下载:51/0  |  提交时间:2023/02/07
Multivariate gain ratio  Biomarker interaction  Disease detection  
A New Context Tree Inference Algorithm for Variable Length Markov Chain Model with Applications to Biological Sequence Analyses 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 18
作者:  An, Shaokun;  Ren, Jie;  Sun, Fengzhu;  Wan, Lin
收藏  |  浏览/下载:111/0  |  提交时间:2022/06/21
biological sequence analyses  consistent context algorithm  variable length Markov chains  word count statistics  
Gene-level association analysis of ordinal traits with functional ordinal logistic regressions 期刊论文
GENETIC EPIDEMIOLOGY, 2022, 页码: 22
作者:  Chiu, Chi-Yang;  Wang, Shuqi;  Zhang, Bingsong;  Luo, Yutong;  Simpson, Claire;  Zhang, Wei;  Wilson, Alexander F.;  Bailey-Wilson, Joan E.;  Agron, Elvira;  Chew, Emily Y.;  Zhang, Jun;  Xiong, Momiao;  Fan, Ruzong
收藏  |  浏览/下载:113/0  |  提交时间:2022/06/21
association mapping  complex disease  functional data analysis  ordinal traits  rare variants  sequence data  
BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载:159/0  |  提交时间:2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
RegScaf: a regression approach to scaffolding 期刊论文
BIOINFORMATICS, 2022, 页码: 8
作者:  Li, Mengtian;  Li, Lei M.
收藏  |  浏览/下载:99/0  |  提交时间:2022/06/21