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浏览/检索结果:
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出处:IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
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An Integrative Framework for Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2021, 卷号: 18, 期号: 1, 页码: 355-364
作者:
Jing, Fang
;
Zhang, Shao-Wu
;
Cao, Zhen
;
Zhang, Shihua
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浏览/下载:160/0
  |  
提交时间:2021/04/26
Bioinformatics
machine learning
transcription factors binding sites
convolutional neural networks
DNA accessibility
histone modification
Comparison of Computational Methods for Imputing Single-Cell RNA-Sequencing Data
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 376-389
作者:
Zhang, Lihua
;
Zhang, Shihua
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浏览/下载:161/0
  |  
提交时间:2020/05/24
Gene expression
Sequential analysis
Bioinformatics
RNA
Matrix converters
Computational biology
Bayes methods
Single-cell RNA-sequencing technique
dropout event
imputation
algorithm
bioinformatics
ELF: Extract Landmark Features By Optimizing Topology Maintenance, Redundancy, and Specificity
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 411-421
作者:
Feng, Zhan-Ying
;
Wang, Yong
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浏览/下载:179/0
  |  
提交时间:2020/05/24
Feature extraction
Topology
Ground penetrating radar
Geophysical measurement techniques
Redundancy
Maintenance engineering
Manganese
Feature selection
topology maintenance
optimization
single cell
Probe Efficient Feature Representation of Gapped K-mer Frequency Vectors from Sequences Using Deep Neural Networks
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 657-667
作者:
Cao, Zhen
;
Zhang, Shihua
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  |  
浏览/下载:180/0
  |  
提交时间:2020/05/24
DNA
Bioinformatics
Kernel
Feature extraction
Support vector machines
Genomics
Task analysis
Bioinformatics
machine learning
gapped k-mer
deep neural network
transcription factor binding site prediction
A Branch Point on Differentiation Trajectory is the Bifurcating Event Revealed by Dynamical Network Biomarker Analysis of Single-Cell Data
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 366-375
作者:
Chen, Ziwei
;
Bai, Xiangqi
;
Ma, Liang
;
Wang, Xiawei
;
Liu, Xiuqin
;
Liu, Yuting
;
Chen, Luonan
;
Wan, Lin
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  |  
浏览/下载:172/0
  |  
提交时间:2020/05/24
Trajectory
Heuristic algorithms
Mice
Correlation
Reactive power
Pseudo temporal trajectory
branch point
DNB theory
reconstruction
single-cell data
bifurcation
dynamical system
Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 3, 页码: 912-924
作者:
Wang, Pei
;
Wang, Daojie
;
Lu, Jinhu
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浏览/下载:193/0
  |  
提交时间:2020/01/10
Structural controllability
Arabidopsis thaliana
gene network
functional gene
enrichment analysis
Network-Regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 卷号: 15, 期号: 3, 页码: 944-953
作者:
Min, Wenwen
;
Liu, Juan
;
Zhang, Shihua
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  |  
浏览/下载:248/0
  |  
提交时间:2018/07/30
Sparse logistic regression
network-regularized penalty
survival risk prediction
feature selection
The Discovery of Mutated Driver Pathways in Cancer: Models and Algorithms
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 卷号: 15, 期号: 3, 页码: 988-998
作者:
Zhang, Junhua
;
Zhang, Shihua
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  |  
浏览/下载:205/0
  |  
提交时间:2018/07/30
Bioinformatics
cancer genomics
driver gene
driver pathway
mutual exclusivity
co-occurring mutation
An Application of Invertibility of Boolean Control Networks to the Control of the Mammalian Cell Cycle
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 卷号: 14, 期号: 1, 页码: 225-229
作者:
Zhang, Kuize
;
Zhang, Lijun
;
Mou, Shaoshuai
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  |  
浏览/下载:102/0
  |  
提交时间:2018/07/30
Boolean control network
invertibility
mammalian cell cycle
A Probabilistic Method for Estimating the Sharing of Identity by Descent for Populations with Migration
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2016, 卷号: 13, 期号: 2, 页码: 281-290
作者:
Ni, Xumin
;
Guo, Wei
;
Yuan, Kai
;
Yang, Xiong
;
Ma, Zhiming
;
Xu, Shuhua
;
Zhang, Shihua
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  |  
浏览/下载:174/0
  |  
提交时间:2018/07/30
Population genetics
identity by descent
probabilistic method
Markov process