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Simple tricks of convolutional neural network architectures improve DNA-protein binding prediction 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 11, 页码: 1837-1843
Authors:  Cao, Zhen;  Zhang, Shihua
Favorite  |  View/Download:122/0  |  Submit date:2020/01/10
Sequence-based prediction of protein-protein interactions using weighted sparse representation model combined with global encoding 期刊论文
BMC BIOINFORMATICS, 2016, 卷号: 17, 页码: 11
Authors:  Huang, Yu-An;  You, Zhu-Hong;  Chen, Xing;  Chan, Keith;  Luo, Xin
Favorite  |  View/Download:74/0  |  Submit date:2018/07/30
Kernel-based data fusion improves the drug-protein interaction prediction 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2011, 卷号: 35, 期号: 6, 页码: 353-362
Authors:  Wang, Yong-Cui;  Zhang, Chun-Hua;  Deng, Nai-Yang;  Wang, Yong
Favorite  |  View/Download:81/0  |  Submit date:2018/07/30
Drug-target interaction  Chemical space  Pharmacological space  Therapeutic space  Genomic space  Kernel function  Support vector machine  
Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context 期刊论文
BMC SYSTEMS BIOLOGY, 2011, 卷号: 5, 页码: 11
Authors:  Wang, Yong-Cui;  Wang, Yong;  Yang, Zhi-Xia;  Deng, Nai-Yang
Favorite  |  View/Download:85/0  |  Submit date:2018/07/30
Prediction of protein-RNA binding sites by a random forest method with combined features 期刊论文
BIOINFORMATICS, 2010, 卷号: 26, 期号: 13, 页码: 1616-1622
Authors:  Liu, Zhi-Ping;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
Favorite  |  View/Download:107/0  |  Submit date:2018/07/30
Predicting DNA- and RNA-binding proteins from sequences with kernel methods 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2009, 卷号: 258, 期号: 2, 页码: 289-293
Authors:  Shao, Xiaojian;  Tian, Yingjie;  Wu, Lingyun;  Wang, Yong;  Jing, Ling;  Deng, Naiyang
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Bioinformatics  Protein function  Conjoint triad  Nucleic-acid-binding protein  Support vector machine  
Recognition of Structure Similarities in Proteins 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2008, 卷号: 21, 期号: 4, 页码: 665-675
Authors:  Wang, Lin;  Qiu, Yuqing;  Wang, Jiguang;  Zhang, Xiangsun
Favorite  |  View/Download:56/0  |  Submit date:2018/07/30
Binding site alignment  circular permutations  flexible alignment  protein structure alignment  protein structure retrieval  
Bridging protein local structures and protein functions 期刊论文
AMINO ACIDS, 2008, 卷号: 35, 期号: 3, 页码: 627-650
Authors:  Liu, Zhi-Ping;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
Favorite  |  View/Download:96/0  |  Submit date:2018/07/30
functional genomics  functional motifs  local structures  protein function prediction  
Discovering functions and revealing mechanisms at molecular level from biological networks 期刊论文
PROTEOMICS, 2007, 卷号: 7, 期号: 16, 页码: 2856-2869
Authors:  Zhang, Shihua;  Jin, Guangxu;  Zhang, Xiang-Sun;  Chen, Luonan
Favorite  |  View/Download:83/0  |  Submit date:2018/07/30
biological network  network analysis  network comparison  network integration  protein interaction network