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Gene-level association analysis of ordinal traits with functional ordinal logistic regressions 期刊论文
GENETIC EPIDEMIOLOGY, 2022, 页码: 22
作者:  Chiu, Chi-Yang;  Wang, Shuqi;  Zhang, Bingsong;  Luo, Yutong;  Simpson, Claire;  Zhang, Wei;  Wilson, Alexander F.;  Bailey-Wilson, Joan E.;  Agron, Elvira;  Chew, Emily Y.;  Zhang, Jun;  Xiong, Momiao;  Fan, Ruzong
收藏  |  浏览/下载：117/0  |  提交时间：2022/06/21
association mapping  complex disease  functional data analysis  ordinal traits  rare variants  sequence data  
Annotating regulatory elements by heterogeneous network embedding 期刊论文
BIOINFORMATICS, 2022, 页码: 13
作者:  Lu, Yurun;  Feng, Zhanying;  Zhang, Songmao;  Wang, Yong
收藏  |  浏览/下载：139/0  |  提交时间：2022/06/21
Confidence intervals for Markov chain transition probabilities based on next generation sequencing reads data 期刊论文
QUANTITATIVE BIOLOGY, 2020, 卷号: 8, 期号: 2, 页码: 143-154
作者:  Wan, Lin;  Kang, Xin;  Ren, Jie;  Sun, Fengzhu
收藏  |  浏览/下载：188/0  |  提交时间：2021/01/14
DNA  FREQUENCIES  PREDICTION  Markov chains  next generation sequencing  transition probabilities  confidence intervals  
Reveal cell type-specific regulatory elements and their characterized histone code classes via a hidden Markov model 期刊论文
BMC GENOMICS, 2018, 卷号: 19, 页码: 13
作者:  Wang, Can;  Zhang, Shihua
收藏  |  浏览/下载：248/0  |  提交时间：2019/01/11
Epigenomics  Cell type-specific regulatory elements  Hidden Markov model  Histone modification  
A remark on copy number variation detection methods 期刊论文
PLOS ONE, 2018, 卷号: 13, 期号: 4, 页码: 11
作者:  Li, Shuo;  Dou, Xialiang;  Gao, Ruiqi;  Ge, Xinzhou;  Qian, Minping;  Wan, Lin
收藏  |  浏览/下载：143/0  |  提交时间：2018/07/30
MSIQ: JOINT MODELING OF MULTIPLE RNA-SEQ SAMPLES FOR ACCURATE ISOFORM QUANTIFICATION 期刊论文
ANNALS OF APPLIED STATISTICS, 2018, 卷号: 12, 期号: 1, 页码: 510-539
作者:  Li, Wei Vivian;  Zhao, Anqi;  Zhang, Shihua;  Li, Jingyi Jessica
收藏  |  浏览/下载：193/0  |  提交时间：2018/07/30
Isoform abundance estimation  joint inference from multiple samples  RNA sequencing  Bayesian hierarchical models  Gibbs sampling  data heterogeneity  
A Robust and Powerful Set-Valued Approach to Rare Variant Association Analyses of Secondary Traits in Case-Control Sequencing Studies 期刊论文
GENETICS, 2017, 卷号: 205, 期号: 3, 页码: 1049-1062
作者:  Kang, Guolian;  Bi, Wenjian;  Zhang, Hang;  Pounds, Stanley;  Cheng, Cheng;  Shete, Sanjay;  Zou, Fei;  Zhao, Yanlong;  Zhang, Ji-Feng;  Yue, Weihua
收藏  |  浏览/下载：137/0  |  提交时间：2018/07/30
secondary traits  rare variants association analyses  case-control sequencing study  set-valued model  
promoteconnectionsofyoungcomputationalbiologistsinchina 期刊论文
genomicsproteomicsbioinformatics, 2013, 卷号: 11, 期号: 4, 页码: 253
作者:  Zhang Shihua;  Wang Xiujie
收藏  |  浏览/下载：129/0  |  提交时间：2020/01/10
A unified computational model for revealing and predicting subtle subtypes of cancers 期刊论文
BMC Bioinformatics, 2012, 卷号: 13, 期号: 1
作者:  Ren,Xianwen;  Wang,Yong;  Wang,Jiguang;  Zhang,Xiang-Sun
收藏  |  浏览/下载：141/0  |  提交时间：2018/07/30
Class discovery  Class prediction  Quadratic programming  Cancer