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EFFICIENT GENERATION OF MEMBRANE AND SOLVENT TETRAHEDRAL MESHES FOR ION CHANNEL FINITE ELEMENT CALCULATION 期刊论文
INTERNATIONAL JOURNAL OF NUMERICAL ANALYSIS AND MODELING, 2022, 卷号: 19, 期号: 6, 页码: 887-906
作者:  Chao, Zhen;  Gui, Sheng;  Lu, Benzhuo;  Xie, Dexuan
收藏  |  浏览/下载:33/0  |  提交时间:2023/02/07
Finite element method  Poisson-Nernst-Planck equations  ion channel  membrane mesh generation  tetrahedral mesh  
A stabilized finite element method for the Poisson-Nernst-Planck equations in three-dimensional ion channel simulations 期刊论文
APPLIED MATHEMATICS LETTERS, 2021, 卷号: 111, 页码: 9
作者:  Wang, Qin;  Li, Hongliang;  Zhang, Linbo;  Lu, Benzhuo
收藏  |  浏览/下载:181/0  |  提交时间:2021/01/14
Poisson-Nernst-Planck  Stabilized finite element method  SUPG  interior penalty  
Model reduction-based initialization methods for solving the Poisson-Nernst-Plank equations in three-dimensional ion channel simulations 期刊论文
JOURNAL OF COMPUTATIONAL PHYSICS, 2020, 卷号: 419, 页码: 18
作者:  Zhang, Qianru;  Gui, Sheng;  Li, Hongliang;  Lu, Benzhuo
收藏  |  浏览/下载:151/0  |  提交时间:2021/04/26
Reduced model  Poisson-Nernst-Planck  Smoluchowski-Poisson-Boltzmann  Initialization  Linear approximation of PNP model  Finite element method  
Incorporating Born solvation energy into the three-dimensional Poisson-Nernst-Planck model to study ion selectivity in KcsA K+ channels 期刊论文
PHYSICAL REVIEW E, 2017, 卷号: 96, 期号: 6, 页码: 10
作者:  Liu, Xuejiao;  Lu, Benzhuo
收藏  |  浏览/下载:155/0  |  提交时间:2018/07/30
Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces 期刊论文
BMC SYSTEMS BIOLOGY, 2010, 卷号: 4, 页码: 12
作者:  Xia, Zheng;  Wu, Ling-Yun;  Zhou, Xiaobo;  Wong, Stephen T. C.
收藏  |  浏览/下载:130/0  |  提交时间:2018/07/30
A computational study of ion conductance in the KcsA K+ channel using a Nernst-Planck model with explicit resident ions 期刊论文
JOURNAL OF CHEMICAL PHYSICS, 2009, 卷号: 131, 期号: 21, 页码: 10
作者:  Jung, Yong-Woon;  Lu, Benzhuo;  Mascagni, Michael
收藏  |  浏览/下载:96/0  |  提交时间:2018/07/30