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中国科学院数学与系统科学研究院机构知识库
KMS Of Academy of mathematics and systems sciences, CAS
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Interaction-based transcriptome analysis via differential network inference
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 11
Authors:
Leng, Jiacheng
;
Wu, Ling-Yun
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View/Download:20/0
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Submit date:2023/02/07
differential network inference
differential expression analysis
interaction-based transcriptome analysis
Using potential variable to study gene-gene and gene-environment interaction effects with genetic model uncertainty
期刊论文
ANNALS OF HUMAN GENETICS, 2022, 页码: 11
Authors:
Hu, Xiaonan
;
Meng, Zhen
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View/Download:31/0
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Submit date:2023/02/07
gene-environment interaction
gene-gene interaction
genetic model
potential variable
power
Biomarker interaction selection and disease detection based on multivariate gain ratio
期刊论文
BMC BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 16
Authors:
Chu, Xiao
;
Jiang, Mao
;
Liu, Zhuo-Jun
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View/Download:26/0
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Submit date:2023/02/07
Multivariate gain ratio
Biomarker interaction
Disease detection
Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF
期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
Authors:
Zhou, Guofeng
;
Sun, Shaoyan
;
Yuan, Qiuyue
;
Zhang, Run
;
Jiang, Ping
;
Li, Guangyu
;
Wang, Yong
;
Li, Xiao
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View/Download:103/0
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Submit date:2021/10/26
heart failure with preserved ejection fraction
differentially expressed genes
differentially correlated gene pairs
differential network
molecular docking
GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes
期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 682-696
Authors:
Shao, Yi
;
Chen, Chunyan
;
Shen, Hao
;
He, Bin Z.
;
Yu, Daqi
;
Jiang, Shuai
;
Zhao, Shilei
;
Gao, Zhiqiang
;
Zhu, Zhenglin
;
Chen, Xi
;
Fu, Yan
;
Chen, Hua
;
Gao, Ge
;
Long, Manyuan
;
Zhang, Yong E.
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View/Download:156/0
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Submit date:2020/01/10
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations
期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
Authors:
Jing, Fang
;
Zhang, Shao-Wu
;
Zhang, Shihua
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View/Download:144/0
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Submit date:2019/04/02
Biological network
network alignment
gene ontology
alignment graph
optimization
Predicting disease-related genes by path structure and community structure in protein-protein networks
期刊论文
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2018, 页码: 22
Authors:
Hu, Ke
;
Hu, Jing-Bo
;
Tang, Liang
;
Xiang, Ju
;
Ma, Jin-Long
;
Gao, Yuan-Yuan
;
Li, Hui-Jia
;
Zhang, Yan
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View/Download:116/0
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Submit date:2019/01/11
random graphs
networks
protein interaction networks
Network-Regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 卷号: 15, 期号: 3, 页码: 944-953
Authors:
Min, Wenwen
;
Liu, Juan
;
Zhang, Shihua
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View/Download:214/0
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Submit date:2018/07/30
Sparse logistic regression
network-regularized penalty
survival risk prediction
feature selection
Gene co-opening network deciphers gene functional relationships
期刊论文
MOLECULAR BIOSYSTEMS, 2017, 卷号: 13, 期号: 11, 页码: 2428-2439
Authors:
Li, Wenran
;
Wang, Meng
;
Sun, Jinghao
;
Wang, Yong
;
Jiang, Rui
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View/Download:118/0
  |  
Submit date:2018/07/30
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis
期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 14
Authors:
Sun, Duanchen
;
Liu, Yinliang
;
Zhang, Xiang-Sun
;
Wu, Ling-Yun
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View/Download:115/0
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Submit date:2018/07/30
Gene ontology
Enrichment analysis
Network-based probabilistic generative model
Integer programming
Complex diseases