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Interaction-based transcriptome analysis via differential network inference 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 11
Authors:  Leng, Jiacheng;  Wu, Ling-Yun
Favorite  |  View/Download：20/0  |  Submit date：2023/02/07
differential network inference  differential expression analysis  interaction-based transcriptome analysis  
Using potential variable to study gene-gene and gene-environment interaction effects with genetic model uncertainty 期刊论文
ANNALS OF HUMAN GENETICS, 2022, 页码: 11
Authors:  Hu, Xiaonan;  Meng, Zhen
Favorite  |  View/Download：31/0  |  Submit date：2023/02/07
gene-environment interaction  gene-gene interaction  genetic model  potential variable  power  
Biomarker interaction selection and disease detection based on multivariate gain ratio 期刊论文
BMC BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 16
Authors:  Chu, Xiao;  Jiang, Mao;  Liu, Zhuo-Jun
Favorite  |  View/Download：26/0  |  Submit date：2023/02/07
Multivariate gain ratio  Biomarker interaction  Disease detection  
Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF 期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
Authors:  Zhou, Guofeng;  Sun, Shaoyan;  Yuan, Qiuyue;  Zhang, Run;  Jiang, Ping;  Li, Guangyu;  Wang, Yong;  Li, Xiao
Favorite  |  View/Download：103/0  |  Submit date：2021/10/26
heart failure with preserved ejection fraction  differentially expressed genes  differentially correlated gene pairs  differential network  molecular docking  
GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 682-696
Authors:  Shao, Yi;  Chen, Chunyan;  Shen, Hao;  He, Bin Z.;  Yu, Daqi;  Jiang, Shuai;  Zhao, Shilei;  Gao, Zhiqiang;  Zhu, Zhenglin;  Chen, Xi;  Fu, Yan;  Chen, Hua;  Gao, Ge;  Long, Manyuan;  Zhang, Yong E.
Favorite  |  View/Download：156/0  |  Submit date：2020/01/10
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
Favorite  |  View/Download：144/0  |  Submit date：2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
Predicting disease-related genes by path structure and community structure in protein-protein networks 期刊论文
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2018, 页码: 22
Authors:  Hu, Ke;  Hu, Jing-Bo;  Tang, Liang;  Xiang, Ju;  Ma, Jin-Long;  Gao, Yuan-Yuan;  Li, Hui-Jia;  Zhang, Yan
Favorite  |  View/Download：116/0  |  Submit date：2019/01/11
random graphs  networks  protein interaction networks  
Network-Regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 卷号: 15, 期号: 3, 页码: 944-953
Authors:  Min, Wenwen;  Liu, Juan;  Zhang, Shihua
Favorite  |  View/Download：214/0  |  Submit date：2018/07/30
Sparse logistic regression  network-regularized penalty  survival risk prediction  feature selection  
Gene co-opening network deciphers gene functional relationships 期刊论文
MOLECULAR BIOSYSTEMS, 2017, 卷号: 13, 期号: 11, 页码: 2428-2439
Authors:  Li, Wenran;  Wang, Meng;  Sun, Jinghao;  Wang, Yong;  Jiang, Rui
Favorite  |  View/Download：118/0  |  Submit date：2018/07/30
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 14
Authors:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
Favorite  |  View/Download：115/0  |  Submit date：2018/07/30
Gene ontology  Enrichment analysis  Network-based probabilistic generative model  Integer programming  Complex diseases