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Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
Favorite  |  View/Download:4/0  |  Submit date:2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
CEA: Combination-based gene set functional enrichment analysis 期刊论文
SCIENTIFIC REPORTS, 2018, 卷号: 8, 页码: 13
Authors:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
Favorite  |  View/Download:10/0  |  Submit date:2018/10/07
GIMDA: Graphlet interaction-based MiRNA-disease association prediction 期刊论文
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2018, 卷号: 22, 期号: 3, 页码: 1548-1561
Authors:  Chen, Xing;  Guan, Na-Na;  Li, Jian-Qiang;  Yan, Gui-Ying
Favorite  |  View/Download:4/0  |  Submit date:2018/07/30
miRNA  disease  miRNA-disease association  graphlet interaction  
HAMDA: Hybrid Approach for MiRNA-Disease Association prediction 期刊论文
JOURNAL OF BIOMEDICAL INFORMATICS, 2017, 卷号: 76, 页码: 50-58
Authors:  Chen, Xing;  Niu, Ya-Wei;  Wang, Guang-Hui;  Yan, Gui-Ying
Favorite  |  View/Download:4/0  |  Submit date:2018/07/30
miRNA  Disease  miRNA-disease association  Hybrid prediction approach  Recommendation systems  
A novel computational model based on super-disease and miRNA for potential miRNA-disease association prediction 期刊论文
MOLECULAR BIOSYSTEMS, 2017, 卷号: 13, 期号: 6, 页码: 1202-1212
Authors:  Chen, Xing;  Jiang, Zhi-Chao;  Xie, Di;  Huang, De-Shuang;  Zhao, Qi;  Yan, Gui-Ying;  You, Zhu-Hong
Favorite  |  View/Download:5/0  |  Submit date:2018/07/30
PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2017, 卷号: 13, 期号: 3, 页码: 22
Authors:  You, Zhu-Hong;  Huang, Zhi-An;  Zhu, Zexuan;  Yan, Gui-Ying;  Li, Zheng-Wei;  Wen, Zhenkun;  Chen, Xing
Favorite  |  View/Download:4/0  |  Submit date:2018/07/30
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 13
Authors:  Liu, Zhi-Ping;  Liu, Shutang;  Chen, Ruitang;  Huang, Xiaopeng;  Wu, Ling-Yun
Favorite  |  View/Download:8/0  |  Submit date:2018/07/30
RNA-binding pocket  Local structure classification  Structural alignment  Network clustering  Structure motif  
RKNNMDA: Ranking-based KNN for MiRNA-Disease Association prediction 期刊论文
RNA BIOLOGY, 2017, 卷号: 14, 期号: 7, 页码: 952-962
Authors:  Chen, Xing;  Wu, Qiao-Feng;  Yan, Gui-Ying
Favorite  |  View/Download:5/0  |  Submit date:2018/07/30
Disease  disease semantic similarity  KNN algorithm  miRNAs  miRNA-disease association  SVM Ranking model  
HGIMDA: Heterogeneous graph inference for miRNA-disease association prediction 期刊论文
ONCOTARGET, 2016, 卷号: 7, 期号: 40, 页码: 65257-65269
Authors:  Chen, Xing;  Yan, Chenggang Clarence;  Zhang, Xu;  You, Zhu-Hong;  Huang, Yu-An;  Yan, Gui-Ying
Favorite  |  View/Download:3/0  |  Submit date:2018/07/30
microRNA  disease  microRNA-disease association  heterogeneous network  similarity  
ILNCSIM: improved lncRNA functional similarity calculation model 期刊论文
ONCOTARGET, 2016, 卷号: 7, 期号: 18, 页码: 25902-25914
Authors:  Huang, Yu-An;  Chen, Xing;  You, Zhu-Hong;  Huang, De-Shuang;  Chan, Keith C. C.
Favorite  |  View/Download:3/0  |  Submit date:2018/07/30
lncRNAs  functional similarity  disease  cancer  directed acyclic graph