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MUREN: a robust and multi-reference approach of RNA-seq transcript normalization 期刊论文
BMC Bioinformatics, 2021, 卷号: 22, 期号: 1
作者:  Feng,Yance;  Li,Lei M.
收藏  |  浏览/下载：125/0  |  提交时间：2021/10/26
RNA-seq  Normalization  Asymmetrically regulated transcription profiles (ART)  Skewness  Mode  Multi-reference  
Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF 期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
作者:  Zhou, Guofeng;  Sun, Shaoyan;  Yuan, Qiuyue;  Zhang, Run;  Jiang, Ping;  Li, Guangyu;  Wang, Yong;  Li, Xiao
收藏  |  浏览/下载：127/0  |  提交时间：2021/10/26
heart failure with preserved ejection fraction  differentially expressed genes  differentially correlated gene pairs  differential network  molecular docking  
Circular Trajectory Reconstruction Uncovers Cell-Cycle Progression and Regulatory Dynamics from Single-Cell Hi-C Maps 期刊论文
ADVANCED SCIENCE, 2019, 页码: 13
作者:  Ye, Yusen;  Gao, Lin;  Zhang, Shihua
收藏  |  浏览/下载：261/0  |  提交时间：2020/01/10
cell cycle  chromosomal architectures  circular trajectory  dynamic structures  single-cell Hi-C maps  
Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 3, 页码: 912-924
作者:  Wang, Pei;  Wang, Daojie;  Lu, Jinhu
收藏  |  浏览/下载：193/0  |  提交时间：2020/01/10
Structural controllability  Arabidopsis thaliana  gene network  functional gene  enrichment analysis  
Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach 期刊论文
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2019, 卷号: 114, 期号: 526, 页码: 657-667
作者:  Wu, Leqin;  Qiu, Xing;  Yuan, Ya-xiang;  Wu, Hulin
收藏  |  浏览/下载：181/0  |  提交时间：2020/01/10
Complex system  Eigenvalue updating algorithm  High dimension  Matrix-based variable selection  Ordinary differential equation  Separable least squares  
An Application of Invertibility of Boolean Control Networks to the Control of the Mammalian Cell Cycle 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 卷号: 14, 期号: 1, 页码: 225-229
作者:  Zhang, Kuize;  Zhang, Lijun;  Mou, Shaoshuai
收藏  |  浏览/下载：103/0  |  提交时间：2018/07/30
Boolean control network  invertibility  mammalian cell cycle  
An integrative and comparative study of pan-cancer transcriptomes reveals distinct cancer common and specific signatures 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 13
作者:  Cao, Zhen;  Zhang, Shihua
收藏  |  浏览/下载：130/0  |  提交时间：2018/07/30
Invertibility and nonsingularity of Boolean control networks 期刊论文
AUTOMATICA, 2015, 卷号: 60, 页码: 155-164
作者:  Zhang, Kuize;  Zhang, Lijun;  Xie, Lihua
收藏  |  浏览/下载：129/0  |  提交时间：2018/07/30
Boolean control network  Invertibility  Nonsingularity  Symbolic dynamics  Weighted pair graph  Semi-tensor product of matrices  Control of the mammalian cell cycle  
A linear programming model based on network flow for pathway inference 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2010, 卷号: 23, 期号: 5, 页码: 971-977
作者:  Ren, Xianwen;  Zhang, Xiang-Sun
收藏  |  浏览/下载：97/0  |  提交时间：2018/07/30
Gene expression  linear programming  network flow  pathway inference  protein interaction network  
alinearprogrammingmodelbasedonnetworkflowforpathwayinference 期刊论文
journalofsystemsscienceandcomplexity, 2010, 卷号: 000, 期号: 005, 页码: 971
作者:  Ren Xianwen;  Zhang Xiangsun
收藏  |  浏览/下载：99/0  |  提交时间：2020/01/10