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Circular Trajectory Reconstruction Uncovers Cell-Cycle Progression and Regulatory Dynamics from Single-Cell Hi-C Maps 期刊论文
ADVANCED SCIENCE, 2019, 页码: 13
Authors:  Ye, Yusen;  Gao, Lin;  Zhang, Shihua
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cell cycle  chromosomal architectures  circular trajectory  dynamic structures  single-cell Hi-C maps  
Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 3, 页码: 912-924
Authors:  Wang, Pei;  Wang, Daojie;  Lu, Jinhu
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Structural controllability  Arabidopsis thaliana  gene network  functional gene  enrichment analysis  
Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach 期刊论文
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2019, 卷号: 114, 期号: 526, 页码: 657-667
Authors:  Wu, Leqin;  Qiu, Xing;  Yuan, Ya-xiang;  Wu, Hulin
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Complex system  Eigenvalue updating algorithm  High dimension  Matrix-based variable selection  Ordinary differential equation  Separable least squares  
An Application of Invertibility of Boolean Control Networks to the Control of the Mammalian Cell Cycle 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 卷号: 14, 期号: 1, 页码: 225-229
Authors:  Zhang, Kuize;  Zhang, Lijun;  Mou, Shaoshuai
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Boolean control network  invertibility  mammalian cell cycle  
An integrative and comparative study of pan-cancer transcriptomes reveals distinct cancer common and specific signatures 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 13
Authors:  Cao, Zhen;  Zhang, Shihua
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Invertibility and nonsingularity of Boolean control networks 期刊论文
AUTOMATICA, 2015, 卷号: 60, 页码: 155-164
Authors:  Zhang, Kuize;  Zhang, Lijun;  Xie, Lihua
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Boolean control network  Invertibility  Nonsingularity  Symbolic dynamics  Weighted pair graph  Semi-tensor product of matrices  Control of the mammalian cell cycle  
A linear programming model based on network flow for pathway inference 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2010, 卷号: 23, 期号: 5, 页码: 971-977
Authors:  Ren, Xianwen;  Zhang, Xiang-Sun
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Gene expression  linear programming  network flow  pathway inference  protein interaction network  
alinearprogrammingmodelbasedonnetworkflowforpathwayinference 期刊论文
journalofsystemsscienceandcomplexity, 2010, 卷号: 000, 期号: 005, 页码: 971
Authors:  Ren Xianwen;  Zhang Xiangsun
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Qualitative analysis of a model of the cell division cycle 期刊论文
DYNAMICS OF CONTINUOUS DISCRETE AND IMPULSIVE SYSTEMS-SERIES B-APPLICATIONS & ALGORITHMS, 2005, 卷号: 12, 期号: 2, 页码: 190-201
Authors:  Lu, JH;  Chen, GR
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cell division  bifurcation  periodic solution  existence  
Dynamical behavior in the modeling of cell division cycle 期刊论文
CHAOS SOLITONS & FRACTALS, 2000, 卷号: 11, 期号: 14, 页码: 2371-2378
Authors:  Zheng, ZH;  Zhou, TS;  Zhang, SC
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