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Interaction-based transcriptome analysis via differential network inference 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 11
作者:  Leng, Jiacheng;  Wu, Ling-Yun
收藏  |  浏览/下载：45/0  |  提交时间：2023/02/07
differential network inference  differential expression analysis  interaction-based transcriptome analysis  
Multilayer Financial Complex Networks and Their Applications 期刊论文
IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS I-REGULAR PAPERS, 2022, 页码: 14
作者:  Li, Xuerong;  Xu, Xiaoyue;  Liu, Jiaqi;  Dong, Jichang;  Lu, Jinhu
收藏  |  浏览/下载：91/0  |  提交时间：2023/02/07
Couplings  Complex networks  Biological system modeling  Banking  Entropy  Analytical models  Urban areas  Financial networks  maximum entropy approach  multi-layer networks  risk contagion  spillover effects  
Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Shan, Xu;  Chen, Jinyu;  Dong, Kangning;  Zhou, Wei;  Zhang, Shihua
收藏  |  浏览/下载：73/0  |  提交时间：2023/02/07
data integration  single-cell transcriptomics  spatial modular patterns  spatial transcriptomics  
Structure-Aware Prototypical Neural Process for Few-Shot Graph Classification 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2022, 页码: 15
作者:  Lin, Xixun;  Li, Zhao;  Zhang, Peng;  Liu, Luchen;  Zhou, Chuan;  Wang, Bin;  Tian, Zhihong
收藏  |  浏览/下载：97/0  |  提交时间：2023/02/07
Task analysis  Kernel  Training  Decoding  Stochastic processes  Predictive models  Computational modeling  Few-shot learning  graph classification  graph neural networks (GNNs)  neural process (NP)  
MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 6, 页码: 14
作者:  Zou, Meng;  Duren, Zhana;  Yuan, Qiuyue;  Li, Henry;  Hutchins, Andrew Paul;  Wong, Wing Hung;  Wang, Yong
收藏  |  浏览/下载：135/0  |  提交时间：2022/04/02
cell type-specific marker  TFs  surface markers  dimension reduction  hierarchical topology  
Online Active Learning for Drifting Data Streams 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2021, 页码: 15
作者:  Liu, Sanmin;  Xue, Shan;  Wu, Jia;  Zhou, Chuan;  Yang, Jian;  Li, Zhao;  Cao, Jie
收藏  |  浏览/下载：139/0  |  提交时间：2022/04/02
Labeling  Data models  Uncertainty  Biological system modeling  Computational modeling  Cognition  Adaptation models  Active learning  concept drift  data stream classification  online incremental learning  
Identification of Common Driver Gene Modules and Associations between Cancers through Integrated Network Analysis 期刊论文
GLOBAL CHALLENGES, 2021, 页码: 13
作者:  Gao, Bo;  Zhao, Yue;  Gao, Yonghang;  Li, Guojun;  Wu, Ling-Yun
收藏  |  浏览/下载：177/0  |  提交时间：2021/10/26
driver gene module  gene mutation  mutual exclusivity  network analysis  signaling pathway  
Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3, 页码: 15
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：111/0  |  提交时间：2022/04/02
cis-regulatory interaction networks  single-cell ATAC-seq  Gaussian graphical LASSO  
A Novel Sparse Graph-Regularized Singular Value Decomposition Model and Its Application to Genomic Data Analysis 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2021, 页码: 15
作者:  Min, Wenwen;  Wan, Xiang;  Chang, Tsung-Hui;  Zhang, Shihua
收藏  |  浏览/下载：134/0  |  提交时间：2022/04/02
Gene expression  Biology  Biological system modeling  Principal component analysis  Mathematical model  Data models  Big Data  Absolute-valued graph regularization  graph regularization  sparse learning  structured sparse singular value decomposition (SVD)  
Circular Complex-Valued GMDH-Type Neural Network for Real-Valued Classification Problems 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2020, 卷号: 31, 期号: 12, 页码: 5285-5299
作者:  Xiao, Jin;  Jia, Yanlin;  Jiang, Xiaoyi;  Wang, Shouyang
收藏  |  浏览/下载：132/0  |  提交时间：2021/04/26
Biological system modeling  Data models  Biological neural networks  Predictive models  Neurons  Mathematical model  Complex-valued external criterion  complex-valued group method of data handling (GMDH)-type neural network  parameter estimation  real-valued classification