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DeepDigest: Prediction of Protein Proteolytic Digestion with Deep Learning 期刊论文
ANALYTICAL CHEMISTRY, 2021, 卷号: 93, 期号: 15, 页码: 6094-6103
作者:  Yang, Jinghan;  Gao, Zhiqiang;  Ren, Xiuhan;  Sheng, Jie;  Xu, Ping;  Chang, Cheng;  Fu, Yan
收藏  |  浏览/下载：141/0  |  提交时间：2021/10/26
Quality control of single amino acid variations detected by tandem mass spectrometry 期刊论文
JOURNAL OF PROTEOMICS, 2018, 卷号: 187, 页码: 144-151
作者:  Yi, Xinpei;  Wang, Bo;  An, Zhiwu;  Gong, Fuzhou;  Li, Jing;  Fu, Yan
收藏  |  浏览/下载：276/0  |  提交时间：2018/11/16
Single amino acid variations  Mass spectrometry  Peptide identification  False discovery rate  Unrestrictive mass shift relocalization  
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 13
作者:  Guo, Yuzhen;  Tao, Fengying;  Wu, Zikai;  Wang, Yong
收藏  |  浏览/下载：157/0  |  提交时间：2018/07/30
Protein structure prediction  HP model  3D lattice  Particle swarm optimization  Protein stability  
Gly-PseAAC: Identifying protein lysine glycation through sequences 期刊论文
GENE, 2017, 卷号: 602, 页码: 1-7
作者:  Xu, Yan;  Li, Li;  Ding, Jun;  Wu, Ling-Yun;  Mai, Guoqin;  Zhou, Fengfeng
收藏  |  浏览/下载：157/0  |  提交时间：2018/07/30
Glycation  Amino acid propensity  Support Vector Machine  
Improved protein-protein interactions prediction via weighted sparse representation model combining continuous wavelet descriptor and PseAA composition 期刊论文
BMC SYSTEMS BIOLOGY, 2016, 卷号: 10, 页码: 10
作者:  Huang, Yu-An;  You, Zhu-Hong;  Chen, Xing;  Yan, Gui-Ying
收藏  |  浏览/下载：160/0  |  提交时间：2018/07/30
Protein-protein interactions  Protein sequence  Continuous wavelet transform  Sparse representation based classifier  
Mal-Lys: prediction of lysine malonylation sites in proteins integrated sequence-based features with mRMR feature selection 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 7
作者:  Xu, Yan;  Ding, Ya-Xin;  Ding, Jun;  Wu, Ling-Yun;  Xue, Yu
收藏  |  浏览/下载：132/0  |  提交时间：2018/07/30
Sequence-based prediction of protein-protein interactions using weighted sparse representation model combined with global encoding 期刊论文
BMC BIOINFORMATICS, 2016, 卷号: 17, 页码: 11
作者:  Huang, Yu-An;  You, Zhu-Hong;  Chen, Xing;  Chan, Keith;  Luo, Xin
收藏  |  浏览/下载：119/0  |  提交时间：2018/07/30
Extended particle swarm optimisation method for folding protein on triangular lattice 期刊论文
IET SYSTEMS BIOLOGY, 2016, 卷号: 10, 期号: 1, 页码: 30-33
作者:  Guo, Yuzhen;  Wu, Zikai;  Wang, Ying;  Wang, Yong
收藏  |  浏览/下载：133/0  |  提交时间：2018/07/30
proteins  molecular biophysics  molecular configurations  particle swarm optimisation  bioinformatics  extended particle swarm optimisation method  triangular lattice  protein structure prediction problem  two-dimensional hydrophobic-polar model  noncompact conformation  amino acid sequence  single point adjustment strategy  protein folding  
Computational probing protein-protein interactions targeting small molecules 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 2, 页码: 226-234
作者:  Wang, Yong-Cui;  Chen, Shi-Long;  Deng, Nai-Yang;  Wang, Yong
收藏  |  浏览/下载：131/0  |  提交时间：2018/07/30
Phogly-PseAAC: Prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2015, 卷号: 379, 页码: 10-15
作者:  Xu, Yan;  Ding, Ya-Xin;  Ding, Jun;  Wu, Ling-Yun;  Deng, Nai-Yang
收藏  |  浏览/下载：132/0  |  提交时间：2018/07/30
Amino acid propensity  F-score  Phosphoglycerylation