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Time course regulatory analysis based on paired expression and chromatin accessibility data 期刊论文
GENOME RESEARCH, 2020, 卷号: 30, 期号: 4, 页码: 622-634
Authors:  Duren, Zhana;  Chen, Xi;  Xin, Jingxue;  Wang, Yong;  Wong, Wing Hung
Favorite  |  View/Download:0/0  |  Submit date:2020/06/30
Distributed Kalman Filters With State Equality Constraints: Time-Based and Event-Triggered Communications 期刊论文
IEEE TRANSACTIONS ON AUTOMATIC CONTROL, 2020, 卷号: 65, 期号: 1, 页码: 28-43
Authors:  He, Xingkang;  Hu, Chen;  Hong, Yiguang;  Shi, Ling;  Fang, Hai-Tao
Favorite  |  View/Download:2/0  |  Submit date:2020/05/24
Kalman filters  Observability  Covariance matrices  STEM  Protocols  State estimation  Collective observability  communication rate  consistency  distributed kalman filter  event-triggered  multiagent systems  state equality constraint (SEC)  
Learning common and specific patterns from data of multiple interrelated biological scenarios with matrix factorization 期刊论文
NUCLEIC ACIDS RESEARCH, 2019, 卷号: 47, 期号: 13, 页码: 6606-6617
Authors:  Zhang, Lihua;  Zhang, Shihua
Favorite  |  View/Download:6/0  |  Submit date:2020/01/10
TFAP2C-and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment 期刊论文
CELL STEM CELL, 2019, 卷号: 24, 期号: 2, 页码: 271-+
Authors:  Li, Lingjie;  Wang, Yong;  Torkelson, Jessica L.;  Shankar, Gautam;  Pattison, Jillian M.;  Zhen, Hanson H.;  Fang, Fengqin;  Duren, Zhana;  Xin, Jingxue;  Gaddam, Sadhana;  Melo, Sandra P.;  Piekos, Samantha N.;  Li, Jiang;  Liaw, Eric J.;  Chen, Lang;  Li, Rui;  Wernig, Marius;  Wong, Wing H.;  Chang, Howard Y.;  Oro, Anthony E.
Favorite  |  View/Download:19/0  |  Submit date:2019/03/11
MSIQ: JOINT MODELING OF MULTIPLE RNA-SEQ SAMPLES FOR ACCURATE ISOFORM QUANTIFICATION 期刊论文
ANNALS OF APPLIED STATISTICS, 2018, 卷号: 12, 期号: 1, 页码: 510-539
Authors:  Li, Wei Vivian;  Zhao, Anqi;  Zhang, Shihua;  Li, Jingyi Jessica
Favorite  |  View/Download:11/0  |  Submit date:2018/07/30
Isoform abundance estimation  joint inference from multiple samples  RNA sequencing  Bayesian hierarchical models  Gibbs sampling  data heterogeneity  
Models of global gene expression define major domains of cell type and tissue identity 期刊论文
NUCLEIC ACIDS RESEARCH, 2017, 卷号: 45, 期号: 5, 页码: 2354-2367
Authors:  Hutchins, Andrew P.;  Yang, Zhongzhou;  Li, Yuhao;  He, Fangfang;  Fu, Xiuling;  Wang, Xiaoshan;  Li, Dongwei;  Liu, Kairong;  He, Jiangping;  Wang, Yong;  Chen, Jiekai;  Esteban, Miguel A.;  Pei, Duanqing
Favorite  |  View/Download:6/0  |  Submit date:2018/07/30
A systematic method to identify modulation of transcriptional regulation via chromatin activity reveals regulatory network during mESC differentiation 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 12
Authors:  Duren, Zhana;  Wang, Yong
Favorite  |  View/Download:6/0  |  Submit date:2018/07/30
Singularly perturbed Markov chains: Limit results and applications 期刊论文
ANNALS OF APPLIED PROBABILITY, 2007, 卷号: 17, 期号: 1, 页码: 207-229
Authors:  Yin, George;  Zhang, Hanqin
Favorite  |  View/Download:4/0  |  Submit date:2018/07/30
singular perturbation  Markov chain  asymptotic expansion  occupation measure  diffusion process