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Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data 期刊论文
BMC GENOMICS, 2018, 卷号: 19, 页码: 16
Authors:  Zhang, Lirong;  Xue, Gaogao;  Liu, Junjie;  Li, Qianzhong;  Wang, Yong
Favorite  |  View/Download:6/0  |  Submit date:2019/01/11
Transcription factor  Histone modification  Co-localization  Dynamics  
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 13
Authors:  Guo, Yuzhen;  Tao, Fengying;  Wu, Zikai;  Wang, Yong
Favorite  |  View/Download:7/0  |  Submit date:2018/07/30
Protein structure prediction  HP model  3D lattice  Particle swarm optimization  Protein stability  
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 13
Authors:  Liu, Zhi-Ping;  Liu, Shutang;  Chen, Ruitang;  Huang, Xiaopeng;  Wu, Ling-Yun
Favorite  |  View/Download:8/0  |  Submit date:2018/07/30
RNA-binding pocket  Local structure classification  Structural alignment  Network clustering  Structure motif  
Accurate prediction of protein-protein interactions by integrating potential evolutionary information embedded in PSSM profile and discriminative vector machine classifier 期刊论文
ONCOTARGET, 2017, 卷号: 8, 期号: 14, 页码: 23638-23649
Authors:  Li, Zheng-Wei;  You, Zhu-Hong;  Chen, Xing;  Li, Li-Ping;  Huang, De-Shuang;  Yan, Gui-Ying;  Nie, Ru;  Huang, Yu-An
Favorite  |  View/Download:4/0  |  Submit date:2018/07/30
disease  position-specific scoring matrix  weber local descriptor  cancer  protein-protein interactions  
Improved protein-protein interactions prediction via weighted sparse representation model combining continuous wavelet descriptor and PseAA composition 期刊论文
BMC SYSTEMS BIOLOGY, 2016, 卷号: 10, 页码: 10
Authors:  Huang, Yu-An;  You, Zhu-Hong;  Chen, Xing;  Yan, Gui-Ying
Favorite  |  View/Download:3/0  |  Submit date:2018/07/30
Protein-protein interactions  Protein sequence  Continuous wavelet transform  Sparse representation based classifier  
Improving protein-protein interactions prediction accuracy using protein evolutionary information and relevance vector machine model 期刊论文
PROTEIN SCIENCE, 2016, 卷号: 25, 期号: 10, 页码: 1825-1833
Authors:  An, Ji-Yong;  Meng, Fan-Rong;  You, Zhu-Hong;  Chen, Xing;  Yan, Gui-Ying;  Hu, Ji-Pu
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evolutionary information  position specific scoring matrix  proteomics  
Sequence-based prediction of protein-protein interactions using weighted sparse representation model combined with global encoding 期刊论文
BMC BIOINFORMATICS, 2016, 卷号: 17, 页码: 11
Authors:  Huang, Yu-An;  You, Zhu-Hong;  Chen, Xing;  Chan, Keith;  Luo, Xin
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Computational probing protein-protein interactions targeting small molecules 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 2, 页码: 226-234
Authors:  Wang, Yong-Cui;  Chen, Shi-Long;  Deng, Nai-Yang;  Wang, Yong
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Detection of Interactions between Proteins through Rotation Forest and Local Phase Quantization Descriptors 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2016, 卷号: 17, 期号: 1, 页码: 11
Authors:  Wong, Leon;  You, Zhu-Hong;  Ming, Zhong;  Li, Jianqiang;  Chen, Xing;  Huang, Yu-An
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protein-protein interaction  Rotation Forest  Physicochemical Property Response Matrix (PR)  Local Phase Quantization  
Robust and accurate prediction of protein self-interactions from amino acids sequence using evolutionary information 期刊论文
MOLECULAR BIOSYSTEMS, 2016, 卷号: 12, 期号: 12, 页码: 3702-3710
Authors:  An, Ji-Yong;  You, Zhu-Hong;  Chen, Xing;  Huang, De-Shuang;  Yan, Guiying;  Wang, Da-Fu
Favorite  |  View/Download:7/0  |  Submit date:2018/07/30