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中国科学院数学与系统科学研究院机构知识库
KMS Of Academy of mathematics and systems sciences, CAS
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EFFICIENT GENERATION OF MEMBRANE AND SOLVENT TETRAHEDRAL MESHES FOR ION CHANNEL FINITE ELEMENT CALCULATION
期刊论文
INTERNATIONAL JOURNAL OF NUMERICAL ANALYSIS AND MODELING, 2022, 卷号: 19, 期号: 6, 页码: 887-906
Authors:
Chao, Zhen
;
Gui, Sheng
;
Lu, Benzhuo
;
Xie, Dexuan
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View/Download:12/0
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Submit date:2023/02/07
Finite element method
Poisson-Nernst-Planck equations
ion channel
membrane mesh generation
tetrahedral mesh
An inverse averaging finite element method for solving three-dimensional Poisson-Nernst-Planck equations in nanopore system simulations
期刊论文
JOURNAL OF CHEMICAL PHYSICS, 2021, 卷号: 155, 期号: 19, 页码: 13
Authors:
Zhang, Qianru
;
Wang, Qin
;
Zhang, Linbo
;
Lu, Benzhuo
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View/Download:74/0
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Submit date:2022/04/02
A stabilized finite element method for the Poisson-Nernst-Planck equations in three-dimensional ion channel simulations
期刊论文
APPLIED MATHEMATICS LETTERS, 2021, 卷号: 111, 页码: 9
Authors:
Wang, Qin
;
Li, Hongliang
;
Zhang, Linbo
;
Lu, Benzhuo
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View/Download:140/0
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Submit date:2021/01/14
Poisson-Nernst-Planck
Stabilized finite element method
SUPG
interior penalty
Model reduction-based initialization methods for solving the Poisson-Nernst-Plank equations in three-dimensional ion channel simulations
期刊论文
JOURNAL OF COMPUTATIONAL PHYSICS, 2020, 卷号: 419, 页码: 18
Authors:
Zhang, Qianru
;
Gui, Sheng
;
Li, Hongliang
;
Lu, Benzhuo
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View/Download:110/0
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Submit date:2021/04/26
Reduced model
Poisson-Nernst-Planck
Smoluchowski-Poisson-Boltzmann
Initialization
Linear approximation of PNP model
Finite element method
A Time-Dependent Finite Element Algorithm for Simulations of Ion Current Rectification and Hysteresis Properties of 3D Nanopore System
期刊论文
IEEE TRANSACTIONS ON NANOTECHNOLOGY, 2018, 卷号: 17, 期号: 3, 页码: 513-519
Authors:
Xu, Jingjie
;
Lu, Benzhuo
;
Zhang, Linbo
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Submit date:2018/07/30
3D nanopore
analytical test
backward Euler
FEM
ICR
numerical simulation
PNP equations
varying voltage
ANALYSIS OF THE MEAN FIELD FREE ENERGY FUNCTIONAL OF ELECTROLYTE SOLUTION WITH NONHOMOGENOUS BOUNDARY CONDITIONS AND THE GENERALIZED PB/PNP EQUATIONS WITH INHOMOGENEOUS DIELECTRIC PERMITTIVITY
期刊论文
SIAM JOURNAL ON APPLIED MATHEMATICS, 2018, 卷号: 78, 期号: 2, 页码: 1131-1154
Authors:
Liu, Xuejiao
;
Qiao, Yu
;
Lu, Benzhou
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Submit date:2018/07/30
free energy functional
electrolyte
boundary conditions
variable dielectric
generalized Poisson-Nernst-Planck/Poisson-Boltzmann equations
energy law
MODIFIED POISSON-NERNST-PLANCK MODEL WITH ACCURATE COULOMB CORRELATION IN VARIABLE MEDIA
期刊论文
SIAM JOURNAL ON APPLIED MATHEMATICS, 2018, 卷号: 78, 期号: 1, 页码: 226-245
Authors:
Liu, Pei
;
Ji, Xia
;
Xu, Zhenli
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View/Download:128/0
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Submit date:2018/07/30
charge transport
ion correlation
continuum theory for electrostatics
asymptotic expansion
Green's function
Poisson-Nernst-Planck equations
A Local Approximation of Fundamental Measure Theory Incorporated into Three Dimensional Poisson-Nernst-Planck Equations to Account for Hard Sphere Repulsion Among Ions
期刊论文
JOURNAL OF STATISTICAL PHYSICS, 2016, 卷号: 163, 期号: 1, 页码: 156-174
Authors:
Qiao, Yu
;
Liu, Xuejiao
;
Chen, Minxin
;
Lu, Benzhuo
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View/Download:112/0
  |  
Submit date:2018/07/30
Hard sphere repulsion
Three dimensional fundamental measure theory
Poisson-Nernst-Planck equations
Size-modified PNP
Equation of state
improvementsincontinuummodelingforbiomolecularsystems
期刊论文
chinesephysicsb, 2016, 卷号: 25, 期号: 1
Authors:
Qiao Yu
;
Lu Benzhuo
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View/Download:72/0
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Submit date:2020/01/10
Poisson-Nernst-Planck Equations for Simulating Biomolecular Diffusion-Reaction Processes II: Size Effects on Ionic Distributions and Diffusion-Reaction Rates
期刊论文
BIOPHYSICAL JOURNAL, 2011, 卷号: 100, 期号: 10, 页码: 2475-2485
Authors:
Lu, Benzhuo
;
Zhou, Y. C.
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View/Download:68/0
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Submit date:2018/07/30