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Integrated profiling of human pancreatic cancer organoids reveals chromatin accessibility features associated with drug sensitivity 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 16
Authors:  Shi, Xiaohan;  Li, Yunguang;  Yuan, Qiuyue;  Tang, Shijie;  Guo, Shiwei;  Zhang, Yehan;  He, Juan;  Zhang, Xiaoyu;  Han, Ming;  Liu, Zhuang;  Zhu, Yiqin;  Gao, Suizhi;  Wang, Huan;  Xu, Xiongfei;  Zheng, Kailian;  Jing, Wei;  Chen, Luonan;  Wang, Yong;  Jin, Gang;  Gao, Dong
Favorite  |  View/Download：57/0  |  Submit date：2022/06/21
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 期号: D1, 页码: D27-D38
Authors:  Xue, Yongbiao;  Bao, Yiming;  Zhang Zhang;  Zhao, Wenming;  Xiao, Jingfa;  He, Shun-min;  Zhang, Guoqing;  Li, Yixue;  Guoping, Zhao;  Chen, Runsheng;  Zeng, Jingyao;  Zhang, Yadong;  Shang, Yun-fei;  Mai, Jialin;  Shi, Shuo;  Lu, Mingming;  Bu, Congfan;  Zhang, Zhewen;  Du, Zhenglin;  Wang, Yinying;  Kang, Hongen;  Xu, Tianyi;  Hao, Lili;  Jia, Peilin;  Jiang, Shuai;  Qian, Qiheng;  Zhu, Tong-tong;  Shang, Yunfei;  Zong, Wenting;  Jin, Tong;  Zhang, Yuansheng;  Zou, Dong;  Zhang, Zhang;  Du, Qiang;  Feng, Changrui;  Ma, Lina;  Zhang, Sisi;  Wang, Anke;  Dong, Lili;  Wang, Yan-qing;  Liu, Wan;  Yan, Xing;  Ling, Yunchao;  Zhao, Guoping;  Zhou, Zhihua;  Kang, Wang;  Zhang, Tao;  Ma, Shuai;  Yan, Haoteng;  Liu, Zunpeng;  Ji, Zejun;  Cai, Yusheng;  Wang, Si;  Song, Moshi;  Ren, Jie;  Zhou, Qi;  Qu, Jing;  Zhang, Weiqi;  Liu, Guanghui;  Chen, Xu;  Chen, Tingting;  Sisi, Zhang;  Sun, Yanling;  Yu, Caixia;  Tang, Bixia;  Zhu, Junwei;  Zhai, Shuang;  Sun, Yubin;  Chen, Qiancheng;  Yang, Xiaoyu;  Zhang, Xin;  Sang, Zhengqi;  Wang, Yonggang;  Zhao, Yilin;  Chen, Huanxin;  Lan, Li;  Wang, Yanqing;  Ma, Yingke;  Jia, Yaokai;  Zheng, Xin-chang;  Chen, Meili;  Dong, Zou;  Zhu, Tongtong;  Ming, Chen;  Niu, Guangyi;  Pan, Rong;  Jing, Wei;  Sang, Jian;  Liu, Chang;  Xiong, Yujia;  Lili, Hao;  Zhang, Mochen;  Wang, Guoliang;  Yi, Lizhi;  Wei, Zhao;  Zong, Wenting;  Wu, Song;  Xiong, Zhuang;  Rujiao, Li;  Zheng, Gong;  Li, Rujiao;  Liu, Lin;  Li, Zhao;  Li, Qianpeng;  Wei, Jing;  Luo, Sicheng;  Wang, Jiajia;  Shi, Yirong;  Zhou, Honghong;  Zhang, Peng;  Song, Tingrui;  Li, Yanyan;  Yang, Fei;  Li, Mengwei;  Li, Zhao-hua;  Kang, Hongen;  Zheng, Xinchang;  Li, Ru-jiao;  Tian, Dongmei;  Liu, Xiaonan;  Li, Cuiping;  Teng, Xufei;  Song, Shuhui;  Zhang, Yang;  Niu, Guangyi;  Zhu, Tongtong;  Zhang, Yuansheng;  Chen, Ruru;  Zhang, Rongqin;  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  He, Yungang;  Zhen, Yang;  Li, Cuiping;  Zhu, Junwei;  Li, Lun;  Li, Na;  Gong, Zheng;  Chen, Meili;  Ying Cui;  Duan, Guangya;  Tong, Jin;  Wu, Gangao;  Huang, Tianhao;  Jin, Enhui;  Zhao, Wei;  Kang, Hailong;  Wang, Zhonghuang;  Zeng, Jingyao;  Chen, Hua;  Li, Mingkun;  Zhao, Wenming;  Ning, Wanshan;  Xue, Yu;  Liu, Yanhu;  Cui, Ying;  Zhou, Qijun;  Liu, Xingyan;  Zhang, Longlong;  Mao, Bingyu;  Zhang, Shihua;  Zhang, Yaping;  Wang, Guodong;  Zhu, Qianghui;  Li, Xin;  Li, Menghua;  Liu, Yuanming;  Luo, Hong;  Wu, Xiaoyuan;  Jing, Haichun;  Pan, Yitong;  Chen, Ming;  Ma, Lina;  Shi, Leisheng;  Li, Mingkun;  Lan, Li;  Bao, Yiming;  Zhao, Wen-ming;  Zuo, Zhixiang;  Ren, Jian;  Zhang, Xinxin;  Xiao, Yun;  Li, Xia;  Liu, Dan;  Zhang, Chi;  Xue, Yu;  Zhao, Zheng;  Jiang, Tao;  Wu, Wanying;  Zhao, Fangqing;  Meng, Xianwen;  Peng, Di;  Luo, Hao;  Gao, Feng;  Lin, Shaofeng;  Liu, Chuijie;  Guo, Anyuan;  Yuan, Hao;  Su, Tianhan;  Zhang, Yong E.;  Zhou, Yincong;  Zhang, Weizhi;  Fu, Shanshan;  Tan, Xiaodan;  Xie, Yubin;  Guo, Guoji;  Wang, Chenwei;  Liao, Xingyu;  Gao, Xin;  Wang, Jianxin;  Xie, Guiyan;  Yuan, Chunhui;  Tian, Feng;  Yang, Dechang;  Tang, Dachao;  Wu, Wenyi;  Gou, Yujie;  Han, Cheng;  Cui, Qinghua;  Li, Xiang Shang;  Li, Chuan-Yun;  Luo, XiaoTong;  Ren, Jia;  Li, Xia
Favorite  |  View/Download：167/0  |  Submit date：2022/04/02
Manifold alignment for heterogeneous single-cell multi-omics data integration using Pamona 期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 1, 页码: 211-219
Authors:  Cao, Kai;  Hong, Yiguang;  Wan, Lin
Favorite  |  View/Download：83/0  |  Submit date：2022/04/02
Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data 期刊论文
NATURE BIOTECHNOLOGY, 2021, 页码: 18
Authors:  Sun, Duanchen;  Guan, Xiangnan;  Moran, Amy E.;  Wu, Ling-Yun;  Qian, David Z.;  Schedin, Pepper;  Dai, Mu-Shui;  Danilov, Alexey, V;  Alumkal, Joshi J.;  Adey, Andrew C.;  Spellman, Paul T.;  Xia, Zheng
Favorite  |  View/Download：82/0  |  Submit date：2022/04/02
Approximate distance correlation for selecting highly interrelated genes across datasets 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 11, 页码: 18
Authors:  Shen, Qunlun;  Zhang, Shihua
Favorite  |  View/Download：65/0  |  Submit date：2022/04/02
MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 6, 页码: 14
Authors:  Zou, Meng;  Duren, Zhana;  Yuan, Qiuyue;  Li, Henry;  Hutchins, Andrew Paul;  Wong, Wing Hung;  Wang, Yong
Favorite  |  View/Download：74/0  |  Submit date：2022/04/02
cell type-specific marker  TFs  surface markers  dimension reduction  hierarchical topology  
3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis 期刊论文
CELL, 2021, 卷号: 184, 期号: 3, 页码: 723-+
Authors:  Luo, Xin;  Liu, Yuting;  Dang, Dachang;  Hu, Ting;  Hou, Yingping;  Meng, Xiaoyu;  Zhang, Fengyun;  Li, Tingting;  Wang, Can;  Li, Min;  Wu, Haixu;  Shen, Qiushuo;  Hu, Yan;  Zeng, Xuerui;  He, Xiechao;  Yan, Lanzhen;  Zhang, Shihua;  Li, Cheng;  Su, Bing
Favorite  |  View/Download：104/0  |  Submit date：2021/06/01
A survey and systematic assessment of computational methods for drug response prediction 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 232-246
Authors:  Chen, Jinyu;  Zhang, Louxin
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Drug response prediction  regression model  low rank matrix factorization based approach  Bayesian inference  deep learning  benchmark  
Unsupervised topological alignment for single-cell multi-omics integration 期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 页码: 48-56
Authors:  Cao, Kai;  Bai, Xiangqi;  Hong, Yiguang;  Wan, Lin
Favorite  |  View/Download：73/0  |  Submit date：2021/01/14
3Scover: Identifying Safeguard TF from Cell Type-TF Specificity Network by an Extended Minimum Set Cover Model 期刊论文
ISCIENCE, 2020, 卷号: 23, 期号: 6, 页码: 31
Authors:  Yuan, Qiuyue;  Wang, Yong
Favorite  |  View/Download：105/0  |  Submit date：2020/09/23