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Integrated profiling of human pancreatic cancer organoids reveals chromatin accessibility features associated with drug sensitivity 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 16
Authors:  Shi, Xiaohan;  Li, Yunguang;  Yuan, Qiuyue;  Tang, Shijie;  Guo, Shiwei;  Zhang, Yehan;  He, Juan;  Zhang, Xiaoyu;  Han, Ming;  Liu, Zhuang;  Zhu, Yiqin;  Gao, Suizhi;  Wang, Huan;  Xu, Xiongfei;  Zheng, Kailian;  Jing, Wei;  Chen, Luonan;  Wang, Yong;  Jin, Gang;  Gao, Dong
Favorite  |  View/Download:33/0  |  Submit date:2022/06/21
BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
Authors:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
Favorite  |  View/Download:29/0  |  Submit date:2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs 期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 3, 页码: 770-777
Authors:  Leng, Jiacheng;  Wu, Ling-Yun
Favorite  |  View/Download:53/0  |  Submit date:2022/04/02
Simpson's method for fractional differential equations with a non-singular kernel applied to a chaotic tumor model 期刊论文
PHYSICA SCRIPTA, 2021, 卷号: 96, 期号: 12, 页码: 19
Authors:  Arshad, Sadia;  Saleem, Iram;  Defterli, Ozlem;  Tang, Yifa;  Baleanu, Dumitru
Favorite  |  View/Download:35/0  |  Submit date:2022/04/02
fractional operator with the non-singular kernel  numerical approximation  stability analysis  convergence analysis  tumor model  chaos  
Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data 期刊论文
NATURE BIOTECHNOLOGY, 2021, 页码: 18
Authors:  Sun, Duanchen;  Guan, Xiangnan;  Moran, Amy E.;  Wu, Ling-Yun;  Qian, David Z.;  Schedin, Pepper;  Dai, Mu-Shui;  Danilov, Alexey, V;  Alumkal, Joshi J.;  Adey, Andrew C.;  Spellman, Paul T.;  Xia, Zheng
Favorite  |  View/Download:50/0  |  Submit date:2022/04/02
Approximate distance correlation for selecting highly interrelated genes across datasets 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 11, 页码: 18
Authors:  Shen, Qunlun;  Zhang, Shihua
Favorite  |  View/Download:36/0  |  Submit date:2022/04/02
Simpson’s method for fractional differential equations with a non-singular kernel applied to a chaotic tumor model 期刊论文
Physica Scripta, 2021, 卷号: 96, 期号: 12
Authors:  Arshad,Sadia;  Saleem,Iram;  Defterli,Ozlem;  Tang,Yifa;  Baleanu,Dumitru
Favorite  |  View/Download:39/0  |  Submit date:2022/04/02
fractional operator with the non-singular kernel  numerical approximation  stability analysis  convergence analysis  tumor model  chaos  
On estimating optimal regime for treatment initiation time based on restricted mean residual lifetime 期刊论文
BIOMETRICS, 2021, 页码: 13
Authors:  Chen, Xin;  Song, Rui;  Zhang, Jiajia;  Adams, Swann Arp;  Sun, Liuquan;  Lu, Wenbin
Favorite  |  View/Download:64/0  |  Submit date:2021/10/26
individualized treatment regime  kernel estimation  optimal treatment initiation time  time-to-event data  value function  
Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF 期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
Authors:  Zhou, Guofeng;  Sun, Shaoyan;  Yuan, Qiuyue;  Zhang, Run;  Jiang, Ping;  Li, Guangyu;  Wang, Yong;  Li, Xiao
Favorite  |  View/Download:54/0  |  Submit date:2021/10/26
heart failure with preserved ejection fraction  differentially expressed genes  differentially correlated gene pairs  differential network  molecular docking  
Identification of Common Driver Gene Modules and Associations between Cancers through Integrated Network Analysis 期刊论文
GLOBAL CHALLENGES, 2021, 页码: 13
Authors:  Gao, Bo;  Zhao, Yue;  Gao, Yonghang;  Li, Guojun;  Wu, Ling-Yun
Favorite  |  View/Download:64/0  |  Submit date:2021/10/26
driver gene module  gene mutation  mutual exclusivity  network analysis  signaling pathway