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Prediction of the transcription factor binding sites with meta-learning 期刊论文
METHODS, 2022, 卷号: 203, 页码: 207-213
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
Favorite  |  View/Download：12/0  |  Submit date：2023/02/07
Convolution neural network  Transcription factor binding sites  Meta learning  Noisy labels data  
Towards understanding residual and dilated dense neural networks via convolutional sparse coding 期刊论文
NATIONAL SCIENCE REVIEW, 2021, 卷号: 8, 期号: 3, 页码: 13
Authors:  Zhang, Zhiyang;  Zhang, Shihua
Favorite  |  View/Download：89/0  |  Submit date：2021/10/26
convolutional neural network  convolutional sparse coding  residual neural network  mixed-scale dense neural network  dilated convolution  dense connection  
An Integrative Framework for Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2021, 卷号: 18, 期号: 1, 页码: 355-364
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Cao, Zhen;  Zhang, Shihua
Favorite  |  View/Download：108/0  |  Submit date：2021/04/26
Bioinformatics  machine learning  transcription factors binding sites  convolutional neural networks  DNA accessibility  histone modification  
Prediction of enhancer–promoter interactions using the cross-cell type information and domain adversarial neural network 期刊论文
BMC Bioinformatics, 2020, 卷号: 21, 期号: 1
Authors:  Jing,Fang;  Zhang,Shao-Wu;  Zhang,Shihua
Favorite  |  View/Download：77/0  |  Submit date：2021/01/14
Enhancer–promoter interactions  Cell line  Convolutional neural network  Transfer learning  Gradient reversal layer  
Prediction of enhancer-promoter interactions using the cross-cell type information and domain adversarial neural network 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 16
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
Favorite  |  View/Download：85/0  |  Submit date：2021/01/14
Enhancer–  promoter interactions  Cell line  Convolutional neural network  Transfer learning  Gradient reversal layer  
Make l(1) regularization effective in training sparse CNN 期刊论文
COMPUTATIONAL OPTIMIZATION AND APPLICATIONS, 2020, 卷号: 77, 期号: 1, 页码: 163-182
Authors:  He, Juncai;  Jia, Xiaodong;  Xu, Jinchao;  Zhang, Lian;  Zhao, Liang
Favorite  |  View/Download：91/0  |  Submit date：2020/09/23
Sparse optimization  l(1) regularization  Dual averaging  CNN  
Rethinking Motivation of Deep Neural Architectures 期刊论文
IEEE CIRCUITS AND SYSTEMS MAGAZINE, 2020, 卷号: 20, 期号: 4, 页码: 65-76
Authors:  Luo, Weilin;  Lu, Jinhu;  Li, Xuerong;  Chen, Lei;  Liu, Kexin
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Text-based crude oil price forecasting: A deep learning approach 期刊论文
INTERNATIONAL JOURNAL OF FORECASTING, 2019, 卷号: 35, 期号: 4, 页码: 1548-1560
Authors:  Li, Xuerong;  Shang, Wei;  Wang, Shouyang
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Oil price forecasting  Financial markets  Online news  Text analysis  Convolutional neural network  
Simple tricks of convolutional neural network architectures improve DNA-protein binding prediction 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 11, 页码: 1837-1843
Authors:  Cao, Zhen;  Zhang, Shihua
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基于事件相关电位erps和机器学习的考试焦虑诊断 期刊论文
心理学报, 2019, 卷号: 51, 期号: 10, 页码: 1116
Authors:  章文佩;  沈群伦;  宋锦涛;  周仁来
Favorite  |  View/Download：86/0  |  Submit date：2019/12/13